Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.4e-130 468.8 225 100.0
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 4.9e-107 391.3 225 82.2
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 2.4e-98 362.5 219 80.4
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 6.6e-96 354.4 219 79.0
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.9e-95 352.8 219 79.0
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.5e-92 343.2 208 79.3
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 9.8e-92 340.5 227 71.4
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 6.0e-89 331.3 220 71.4
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 7.3e-87 324.3 226 70.4
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 2.8e-86 322.4 226 69.0
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 7.5e-84 314.3 225 65.3
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 9.2e-82 307.4 214 66.8
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.5e-79 300.1 247 61.1
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.5e-79 300.1 212 65.1
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 9.5e-79 297.4 196 69.9
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 2.1e-78 296.2 218 65.1
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 2.3e-77 292.7 222 64.0
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 4.0e-77 292.0 226 61.5
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.2e-76 290.4 220 62.3
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 2.9e-75 285.8 213 64.8
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 6.4e-75 284.6 217 62.2
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 1.9e-74 283.1 216 64.4
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.1e-73 279.6 198 66.7
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.3e-72 276.9 223 57.8
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.3e-72 276.9 196 65.8
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 5.6e-71 271.6 221 57.5
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 7.3e-71 271.2 219 59.4
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 1.6e-70 270.0 213 60.1
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 6.2e-70 268.1 223 61.0
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 8.1e-70 267.7 205 63.9
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.1e-69 267.3 221 60.6
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 1.8e-69 266.5 221 57.9
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 2.4e-69 266.2 196 64.3
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 5.2e-69 265.0 224 56.2
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 8.9e-69 264.2 219 57.5
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 1.2e-68 263.8 204 62.7
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 1.5e-68 263.5 184 65.2
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 2.6e-68 262.7 249 53.4
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.7e-67 260.0 216 55.1
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 2.2e-67 259.6 213 56.8
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 2.2e-67 259.6 211 57.8
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 2.2e-67 259.6 226 54.4
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 2.9e-67 259.2 216 59.7
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.9e-67 259.2 192 64.6
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 3.2e-66 255.8 218 56.9
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 4.2e-66 255.4 210 59.0
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 4.2e-66 255.4 221 59.7
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 2.1e-65 253.1 218 56.0
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 2.1e-65 253.1 217 58.1
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 4.6e-65 251.9 210 61.0
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 4.6e-65 251.9 219 54.3
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 7.8e-65 251.1 203 59.6
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 7.8e-65 251.1 264 48.9
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.0e-64 250.8 212 55.7
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.3e-64 249.6 210 59.5
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 3.0e-64 249.2 221 57.9
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 3.0e-64 249.2 216 55.1
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.1e-64 248.4 212 60.4
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 8.7e-64 247.7 220 52.7
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.1e-63 247.3 221 57.0
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 1.1e-63 247.3 213 57.7
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.5e-63 246.1 215 58.1
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.5e-63 246.1 210 58.6
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 3.3e-63 245.7 212 57.5
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 4.3e-63 245.4 210 60.0
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 7.3e-63 244.6 210 60.0
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 9.6e-63 244.2 212 59.9
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.6e-62 243.4 210 58.1
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 2.8e-62 242.7 210 60.0
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.8e-62 242.7 193 59.1
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 2.8e-62 242.7 212 54.2
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.8e-62 242.7 204 60.8
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 3.6e-62 242.3 208 54.8
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 4.8e-62 241.9 217 55.8
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 6.2e-62 241.5 216 54.2
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 8.1e-62 241.1 216 53.2
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-61 240.7 210 59.5
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.4e-61 240.4 212 54.2
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.8e-61 240.0 208 54.3
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 2.4e-61 239.6 212 55.2
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 3.1e-61 239.2 210 58.6
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 4.0e-61 238.8 184 59.8
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 5.3e-61 238.4 230 53.0
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 9.0e-61 237.7 244 48.4
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.2e-60 237.3 216 52.3
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 1.5e-60 236.9 218 56.0
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 4.4e-60 235.3 212 55.2
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.8e-60 235.0 214 50.9
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 7.6e-60 234.6 213 56.8
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 7.6e-60 234.6 210 52.4
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 9.9e-60 234.2 220 55.0
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 9.9e-60 234.2 205 55.6
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 1.3e-59 233.8 224 49.6
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.3e-59 233.8 202 53.0
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.7e-59 233.4 217 53.5
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.2e-59 233.0 205 55.6
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.9e-59 232.6 222 50.9
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.9e-59 232.6 218 55.0
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 3.8e-59 232.3 193 57.5
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 8.4e-59 231.1 218 53.2
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 2.4e-58 229.6 161 64.0
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.2e-58 229.2 228 52.2
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 7.1e-58 228.0 218 54.6
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.2e-57 227.3 218 54.1
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.2e-57 227.3 218 54.1
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.7e-57 226.1 232 50.9
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 3.5e-57 225.7 217 55.8
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 4.6e-57 225.3 217 52.1
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.7e-56 223.4 218 54.1
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.3e-56 223.0 203 53.7
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.0e-56 222.6 233 50.6
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 5.1e-56 221.9 228 51.3
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 8.7e-56 221.1 138 73.9
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 8.7e-56 221.1 207 51.7
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.1e-55 220.7 187 61.0
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.1e-55 220.7 226 51.8
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 2.5e-55 219.5 220 51.4
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 5.6e-55 218.4 215 53.0
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 5.6e-55 218.4 204 54.9
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 2.8e-54 216.1 203 49.8
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 2.8e-54 216.1 211 55.5
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 4.8e-54 215.3 212 52.8
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 5.3e-53 211.8 207 47.8
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 6.9e-53 211.5 207 53.1
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.2e-52 210.7 195 51.3
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 3.4e-52 209.1 204 50.0
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 7.6e-52 208.0 208 48.1
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 1.3e-51 207.2 267 40.8
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.9e-51 206.1 205 47.3
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 4.9e-51 205.3 142 67.6
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-50 204.1 232 45.7
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 5.5e-50 201.8 220 46.8
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 7.1e-50 201.4 223 46.2
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 2.7e-49 199.5 223 47.5
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 3.5e-49 199.1 210 50.0
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 4.6e-49 198.7 206 51.0
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 6.0e-49 198.4 190 47.4
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 7.9e-49 198.0 210 50.0
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 1.3e-48 197.2 210 50.0
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 1.3e-48 197.2 223 47.1
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 5.1e-48 195.3 193 51.3
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 7.4e-47 191.4 203 50.7
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 1.3e-46 190.7 193 46.1
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 3.7e-46 189.1 194 49.5
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-45 187.6 209 48.3
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 4.0e-45 185.7 209 47.8
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 5.8e-44 181.8 222 45.5
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 5.8e-44 181.8 222 45.5
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 2.2e-43 179.9 194 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 1.6e-38 163.7 212 40.6
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.4e-37 160.6 249 39.4
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.2e-36 157.5 212 41.0
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.5e-34 148.7 135 51.9
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 5.5e-34 148.7 137 52.6
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 8.7e-32 141.4 159 47.8
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 2.5e-31 139.8 220 38.2
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 3.3e-31 139.4 205 39.5
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.8e-30 136.3 172 41.9
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 4.8e-30 135.6 141 47.5
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 5.0e-27 125.6 142 44.4
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 4.6e-25 119.0 142 40.8
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 7.4e-23 111.7 255 32.5
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.1e-18 97.8 105 44.8
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.9e-18 97.1 82 57.3
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.2e-18 95.9 149 35.6
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 5.7e-15 85.5 61 62.3
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 1.7e-14 84.0 91 51.6
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.2e-14 83.6 70 57.1
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 3.5e-12 76.3 113 38.9
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 9.4e-10 68.2 113 36.3
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.6e-09 67.4 69 44.9
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 2.1e-09 67.0 58 51.7
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.7e-09 65.9 59 50.8
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 1.0e-08 64.7 71 42.3
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 5.2e-08 62.4 71 42.3
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 6.7e-08 62.0 95 38.9
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 9.7e-07 58.2 78 41.0
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.3e-06 57.8 70 44.3
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 2.8e-06 56.6 55 49.1
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 4.8e-06 55.8 76 40.8
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 6.3e-06 55.5 70 42.9
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 6.3e-06 55.5 74 37.8
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 8.2e-06 55.1 69 44.9
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 8.2e-06 55.1 70 42.9


User provided reference genes

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