Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.2e-103 377.9 210 100.0
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.3e-89 332.0 229 83.8
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 2.3e-71 272.7 187 80.7
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.3e-69 266.9 185 80.5
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 3.3e-65 252.3 157 84.1
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 2.2e-61 239.6 184 71.7
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.4e-60 236.9 190 72.6
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 2.4e-60 236.1 187 74.3
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.3e-58 229.6 190 75.8
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 3.0e-58 229.2 185 66.5
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 3.9e-58 228.8 185 73.5
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 6.6e-58 228.0 183 72.1
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.1e-57 227.3 194 68.6
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 1.5e-57 226.9 191 70.7
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.5e-57 226.9 184 70.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.5e-57 226.9 184 70.1
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.3e-57 225.7 200 72.0
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 3.3e-57 225.7 190 65.8
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 5.6e-57 224.9 187 65.8
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 9.6e-57 224.2 183 65.0
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.6e-56 223.4 190 72.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 3.6e-56 222.2 196 66.8
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 3.6e-56 222.2 186 67.2
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 6.2e-56 221.5 180 64.4
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 8.1e-56 221.1 186 69.4
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.4e-55 219.5 195 73.3
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.1e-55 219.2 183 65.0
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 5.3e-55 218.4 193 65.8
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 4.4e-54 215.3 184 67.4
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 5.8e-54 214.9 187 62.6
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 7.6e-54 214.5 187 70.1
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.2e-53 213.0 201 62.2
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.4e-53 211.5 158 77.8
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 3.2e-52 209.1 213 59.6
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 7.1e-52 208.0 188 65.4
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 9.3e-52 207.6 186 58.6
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.6e-51 206.8 176 63.1
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.6e-51 206.8 193 66.8
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.6e-51 206.8 192 67.2
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 2.1e-51 206.5 201 61.7
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 3.5e-51 205.7 187 73.3
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 6.0e-51 204.9 191 63.4
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 6.0e-51 204.9 201 61.2
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 7.8e-51 204.5 184 58.2
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.3e-50 203.8 181 63.0
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.7e-50 203.4 178 66.3
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.7e-50 203.4 201 60.2
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.3e-50 203.0 185 63.8
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 3.9e-50 202.2 192 63.5
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 5.1e-50 201.8 176 60.2
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 5.1e-50 201.8 191 62.8
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 5.1e-50 201.8 191 62.8
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.6e-50 201.4 177 65.0
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 6.6e-50 201.4 177 65.0
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 8.7e-50 201.1 192 63.5
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 8.7e-50 201.1 182 60.4
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 8.7e-50 201.1 178 60.7
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 8.7e-50 201.1 178 60.7
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.1e-49 200.7 198 60.1
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.1e-49 200.7 195 62.1
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.9e-49 199.9 194 59.3
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.9e-49 199.9 182 56.6
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.5e-49 199.5 176 59.7
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.5e-49 199.5 178 60.1
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 3.3e-49 199.1 178 60.1
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 3.3e-49 199.1 182 58.8
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 3.3e-49 199.1 181 61.3
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 4.3e-49 198.7 176 60.2
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 4.3e-49 198.7 184 65.8
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 5.6e-49 198.4 178 63.5
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 5.6e-49 198.4 178 57.9
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.3e-49 198.0 187 62.0
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 9.6e-49 197.6 176 65.9
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 9.6e-49 197.6 178 63.5
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 9.6e-49 197.6 176 65.9
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 9.6e-49 197.6 182 58.2
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.3e-48 197.2 189 63.5
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 2.8e-48 196.1 194 64.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.6e-48 195.7 185 61.6
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 4.8e-48 195.3 176 66.5
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.8e-48 195.3 177 63.8
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 4.8e-48 195.3 182 60.4
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 8.1e-48 194.5 192 55.7
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 1.4e-47 193.7 145 66.9
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.4e-47 193.7 185 62.2
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.8e-47 193.4 194 63.9
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 6.9e-47 191.4 145 66.2
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 6.9e-47 191.4 145 66.2
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 6.9e-47 191.4 183 63.4
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 9.0e-47 191.0 154 64.3
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 9.0e-47 191.0 192 58.9
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 9.0e-47 191.0 194 57.2
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.2e-46 190.7 209 57.4
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.2e-46 190.7 184 62.5
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 2.6e-46 189.5 192 59.4
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 3.4e-46 189.1 178 58.4
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 5.8e-46 188.3 180 62.2
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 5.8e-46 188.3 195 62.1
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.3e-45 187.2 146 67.8
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.4e-45 184.9 184 61.4
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 8.4e-45 184.5 175 57.7
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 1.9e-44 183.3 185 56.2
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.2e-43 180.6 178 53.4
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 4.6e-43 178.7 183 61.2
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 7.9e-43 177.9 190 58.9
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.0e-42 177.6 148 60.1
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 2.3e-42 176.4 149 66.4
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 2.5e-41 172.9 192 56.8
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.5e-41 172.9 183 54.6
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.8e-39 166.8 186 49.5
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.0e-39 165.6 172 52.3
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 1.2e-38 164.1 144 58.3
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 2.0e-38 163.3 201 46.3
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 2.9e-37 159.5 204 47.5
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 2.7e-35 152.9 146 56.8
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 3.5e-35 152.5 135 65.9
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 1.3e-34 150.6 188 55.9
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.3e-34 150.6 140 55.0
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 6.7e-34 148.3 194 50.0
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 8.7e-34 147.9 165 52.1
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 3.7e-32 142.5 133 56.4
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.1e-31 141.0 186 44.1
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 5.8e-30 135.2 119 49.6
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 7.6e-30 134.8 190 43.2
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.0e-29 134.4 198 44.9
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.7e-29 133.7 159 43.4
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 2.9e-29 132.9 145 44.1
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 6.5e-29 131.7 149 46.3
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.2e-28 129.4 153 45.1
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.1e-27 126.7 80 68.8
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 2.1e-27 126.7 177 39.0
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.3e-26 124.0 177 40.7
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 5.1e-26 122.1 101 62.4
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 9.7e-25 117.9 79 59.5
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 8.2e-24 114.8 78 57.7
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.4e-23 114.0 80 55.0
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 2.0e-22 110.2 115 52.2
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.7e-21 107.1 183 41.5
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.8e-21 105.9 119 55.5
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 8.5e-21 104.8 83 63.9
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.1e-20 104.4 119 55.5
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.1e-20 104.4 84 51.2
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.4e-20 104.0 84 52.4
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 7.2e-20 101.7 84 50.0
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.2e-19 100.9 119 42.9
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 2.1e-19 100.1 174 33.3
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.0e-18 97.8 84 47.6
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.7e-18 95.1 84 50.0
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 4.3e-17 92.4 133 54.9
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 3.4e-14 82.8 108 50.0
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 2.9e-13 79.7 93 49.5
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 8.5e-13 78.2 103 48.5
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.1e-12 77.8 82 43.9
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 3.2e-12 76.3 113 43.4
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 1.4e-10 70.9 87 48.3
Oeu041536.1 Olea europaea HOM05D004429 ORTHO05D288779 5.9e-06 55.5 44 59.1


User provided reference genes

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