Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000195g0240 Nicotiana tabacum HOM05D006146 ORTHO05D007924 1.3e-289 999.2 567 100.0
Peaxi162Scf01132g00127 Petunia axillaris HOM05D006146 ORTHO05D007924 9.3e-256 886.7 576 82.3
Solyc09g005120.3 Solanum lycopersicum HOM05D006146 ORTHO05D007924 2.2e-249 865.5 575 79.3
Nitab4.5_0003654g0010 Nicotiana tabacum HOM05D006146 ORTHO05D007924 3.8e-249 864.8 568 87.3
PGSC0003DMG400006271 Solanum tuberosum HOM05D006146 ORTHO05D007924 4.9e-249 864.4 586 80.0
Sopen09g001100 Solanum pennellii HOM05D006146 ORTHO05D007924 1.1e-248 863.2 575 79.0
CAN.G133.15 Capsicum annuum HOM05D006146 ORTHO05D007924 2.1e-244 849.0 575 79.3
Cc06_g01080 Coffea canephora HOM05D006146 ORTHO05D007924 1.2e-197 693.7 573 63.4
Cfa017174 Carpinus fangiana HOM05D006146 ORTHO05D007924 3.1e-195 685.6 577 62.9
CiPaw.09G211700 Carya illinoinensis HOM05D006146 ORTHO05D007924 2.2e-193 679.5 573 61.8
Dinv16910 Davidia involucrata HOM05D006146 ORTHO05D007924 2.5e-192 676.0 575 61.4
CSS0000590 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 3.0e-190 669.1 575 63.1
CSS0012094 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 3.0e-190 669.1 575 63.1
MSTRG.5562 Avicennia marina HOM05D006146 ORTHO05D007924 1.5e-184 650.2 572 61.7
Oeu042663.2 Olea europaea HOM05D006146 ORTHO05D007924 9.5e-184 647.5 547 64.7
Haze_21031 Corylus avellana HOM05D006146 ORTHO05D007924 6.1e-183 644.8 579 63.4
RcHm_v2.0_Chr3g0462541 Rosa chinensis HOM05D006146 ORTHO05D007924 6.1e-183 644.8 581 58.3
Prupe.6G280600 Prunus persica HOM05D006146 ORTHO05D007924 1.0e-182 644.0 574 61.0
Gohir.A09G166500 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.4e-182 643.7 583 61.9
QL07p034872 Quercus lobata HOM05D006146 ORTHO05D007924 2.3e-182 642.9 574 61.5
vmacro20300 Vaccinium macrocarpon HOM05D006146 ORTHO05D007924 8.9e-182 641.0 546 61.5
TAR636G3413 Trochodendron aralioides HOM05D006146 ORTHO05D007924 1.2e-181 640.6 577 61.7
Thecc.05G012100 Theobroma cacao HOM05D006146 ORTHO05D007924 2.8e-180 636.0 589 60.4
Gohir.D09G162100 Gossypium hirsutum HOM05D006146 ORTHO05D007924 8.3e-180 634.4 583 61.4
CANSAT35G1531 Cannabis sativa HOM05D006146 ORTHO05D007924 1.4e-179 633.6 587 59.8
Gorai.006G183800 Gossypium raimondii HOM05D006146 ORTHO05D007924 1.8e-179 633.3 583 61.2
Glyma.18G204000 Glycine max HOM05D006146 ORTHO05D007924 2.9e-177 625.9 581 59.0
Lj1g0005300 Lotus japonicus HOM05D006146 ORTHO05D007924 1.1e-176 624.0 582 59.8
SGA_v2.0_scaffold85G26717 Striga asiatica HOM05D006146 ORTHO05D007924 1.2e-175 620.5 576 58.9
Ciclev10011366m.g Citrus clementina HOM05D006146 ORTHO05D007924 1.6e-175 620.2 574 59.4
FAN14G4754 Fragaria x ananassa HOM05D006146 ORTHO05D007924 8.0e-175 617.8 594 56.2
Migut.J00133 Erythranthe guttata HOM05D006146 ORTHO05D007924 2.3e-174 616.3 568 58.1
FvH4_6g11110 Fragaria vesca HOM05D006146 ORTHO05D007924 2.3e-174 616.3 594 56.2
MELO3C009146.2 Cucumis melo HOM05D006146 ORTHO05D007924 4.0e-174 615.5 581 61.1
MD00G1062300 Malus domestica HOM05D006146 ORTHO05D007924 5.2e-174 615.1 576 56.4
Manes.08G094300 Manihot esculenta HOM05D006146 ORTHO05D007924 6.8e-174 614.8 583 60.4
SalBow5G2678 Salvia bowleyana HOM05D006146 ORTHO05D007924 1.5e-173 613.6 591 58.4
EL10Ac5g12530 Beta vulgaris HOM05D006146 ORTHO05D007924 7.5e-173 611.3 571 59.5
Atru.chr8.2278 Acer truncatum HOM05D006146 ORTHO05D007924 2.9e-172 609.4 571 58.3
arahy.Tifrunner.gnm1.ann1.S46L09 Arachis hypogaea HOM05D006146 ORTHO05D007924 6.4e-172 608.2 599 59.8
FAN02G2047 Fragaria x ananassa HOM05D006146 ORTHO05D007924 8.3e-172 607.8 594 55.6
MD12G1172300 Malus domestica HOM05D006146 ORTHO05D007924 9.2e-171 604.4 575 57.9
Nn2g10908 Nelumbo nucifera HOM05D006146 ORTHO05D007924 4.6e-170 602.1 572 59.3
CsaV3_3G033560 Cucumis sativus L. HOM05D006146 ORTHO05D007924 6.0e-170 601.7 580 60.2
arahy.Tifrunner.gnm1.ann1.D29HQK Arachis hypogaea HOM05D006146 ORTHO05D007924 1.3e-169 600.5 600 59.8
Medtr7g069480 Medicago truncatula HOM05D006146 ORTHO05D007924 5.0e-169 598.6 574 59.8
AL3G19990 Arabidopsis lyrata HOM05D006146 ORTHO05D007924 6.6e-169 598.2 579 57.9
Lj2C71G10 Lonicera japonica HOM05D003030 ORTHO05D003610 1.9e-168 596.7 532 60.2
Psat3g126240 Pisum sativum HOM05D006146 ORTHO05D007924 2.5e-168 596.3 583 57.6
Hund14889 Selenicereus undatus HOM05D006146 ORTHO05D007924 3.3e-168 595.9 578 56.1
TWI53G1621 Tripterygium wilfordii HOM05D006146 ORTHO05D007924 9.5e-168 594.3 583 55.7
AUR62030469 Chenopodium quinoa HOM05D006146 ORTHO05D007924 8.0e-167 591.3 580 60.3
ECA236G4528 Erigeron canadensis HOM05D006146 ORTHO05D007924 2.3e-166 589.7 568 57.6
Gorai.012G116800 Gossypium raimondii HOM05D006146 ORTHO05D007924 6.8e-166 588.2 576 55.9
Thhalv10020374m.g Eutrema salsugineum HOM05D006146 ORTHO05D007924 8.9e-166 587.8 578 60.0
THA.LOC104816204 Tarenaya hassleriana HOM05D006146 ORTHO05D007924 1.5e-165 587.0 574 58.4
Glyma.07G152900 Glycine max HOM05D006146 ORTHO05D007924 4.4e-165 585.5 583 58.1
Carub.0003s0810 Capsella rubella HOM05D006146 ORTHO05D007924 7.5e-165 584.7 579 55.6
HanXRQChr12g0383181 Helianthus annuus HOM05D006146 ORTHO05D007924 7.5e-165 584.7 581 58.7
Actinidia11568 Actinidia chinensis HOM05D006146 ORTHO05D007924 6.4e-164 581.6 565 61.9
Aqoxy4G02469 Aquilegia oxysepala HOM05D006146 ORTHO05D007924 6.4e-164 581.6 573 52.9
Gohir.A04G093600 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.9e-163 580.1 564 56.2
AT3G08970 Arabidopsis thaliana HOM05D006146 ORTHO05D007924 2.4e-163 579.7 593 52.6
Eucgr.A00544 Eucalyptus grandis HOM05D006146 ORTHO05D007924 5.4e-163 578.6 588 57.3
Ah.12g058880 Amaranthus hybridus HOM05D006146 ORTHO05D007924 1.6e-162 577.0 609 52.1
Lsat_1_v5_gn_8_100801 Lactuca sativa HOM05D006146 ORTHO05D007924 1.0e-161 574.3 585 54.2
unitig_578.g15902 Utricularia gibba HOM05D003030 ORTHO05D003610 1.1e-160 570.9 577 56.5
Rhsim05G0219200 Rhododendron simsii HOM05D006146 ORTHO05D007924 1.5e-160 570.5 585 53.8
Lalb_Chr03g0043371 Lupinus albus HOM05D006146 ORTHO05D007924 4.3e-160 568.9 578 56.7
TPR.G35447 Trifolium pratense HOM05D006146 ORTHO05D007924 5.6e-160 568.5 579 58.0
Sp3g07390 Schrenkiella parvula HOM05D006146 ORTHO05D007924 2.8e-159 566.2 575 57.9
Aa31LG5G18940 Aethionema arabicum HOM05D006146 ORTHO05D007924 6.2e-159 565.1 576 58.3
Eucgr.A00545 Eucalyptus grandis HOM05D006146 ORTHO05D007924 6.2e-159 565.1 573 54.1
CARHR083310 Cardamine hirsuta HOM05D006146 ORTHO05D007924 1.2e-157 560.8 575 57.0
C05p58910 Brassica napus HOM05D006146 ORTHO05D007924 3.4e-157 559.3 593 56.7
PSO384G0066 Papaver somniferum HOM05D006146 ORTHO05D007924 9.9e-157 557.8 592 53.0
Sed0026013 Sechium edule HOM05D006146 ORTHO05D007924 6.4e-156 555.1 582 53.6
BolC5t34544H Brassica oleracea HOM05D006146 ORTHO05D007924 1.1e-155 554.3 594 55.1
PSO339G2519 Papaver somniferum HOM05D006146 ORTHO05D007924 1.2e-154 550.8 594 52.5
ClCG10G022330 Citrullus lanatus HOM05D006146 ORTHO05D007924 1.6e-154 550.4 530 59.6
Ca_07664_v3 Cicer arietinum L. HOM05D006146 ORTHO05D007924 3.5e-154 549.3 521 61.2
A05p39870 Brassica napus HOM05D006146 ORTHO05D007924 1.0e-153 547.7 593 55.6
VMungo1383G3422 Vigna mungo HOM05D006146 ORTHO05D007924 1.3e-153 547.4 571 53.2
Phvul.008G095600 Phaseolus vulgaris HOM05D006146 ORTHO05D007924 1.1e-150 537.7 585 56.6
PGR031G2778 Punica granatum HOM05D006146 ORTHO05D007924 4.4e-149 532.3 601 53.6
AUR62010446 Chenopodium quinoa HOM05D006146 ORTHO05D007924 1.7e-148 530.4 489 62.8
MBI03_g05510_MAGBIO Magnolia biondii HOM05D006146 ORTHO05D007924 4.9e-148 528.9 532 54.1
BraA05t22771Z Brassica rapa HOM05D006146 ORTHO05D007924 4.2e-147 525.8 559 55.6
Gohir.D04G132900 Gossypium hirsutum HOM05D006146 ORTHO05D007924 2.7e-146 523.1 616 50.5
Potri.016G120000 Populus trichocarpa HOM05D006146 ORTHO05D007924 5.1e-145 518.8 422 65.6
HPP92_025101 Vanilla planifolia HOM05D006146 ORTHO05D007924 1.6e-143 513.8 574 47.9
Zm00001eb396940 Zea mays HOM05D006146 ORTHO05D007924 1.8e-142 510.4 581 47.7
Dinv13137 Davidia involucrata HOM05D006146 ORTHO05D007924 2.4e-142 510.0 488 55.7
DCAR_015389 Daucus carota HOM05D006146 ORTHO05D007924 1.5e-141 507.3 576 51.9
GSVIVG01003939001 Vitis vinifera HOM05D006146 ORTHO05D007924 2.9e-140 503.1 384 64.8
CDE06G0106 Ceratophyllum demersum HOM05D003030 ORTHO05D003610 1.4e-139 500.7 584 46.7
ATR0681G078 Amborella trichopoda HOM05D006146 ORTHO05D007924 7.1e-139 498.4 553 48.1
FAN05G4820 Fragaria x ananassa HOM05D006146 ORTHO05D007924 2.1e-138 496.9 564 51.4
COL.COLO4_14502 Corchorus olitorius HOM05D006146 ORTHO05D007924 3.3e-136 489.6 584 53.1
Sc22g0002570 Simmondsia chinensis HOM05D006146 ORTHO05D007924 1.3e-127 461.1 429 57.6
SHI12853 Sapria himalayana HOM05D006146 ORTHO05D007924 6.2e-127 458.8 529 48.8
BcaC05g29631 Brassica carinata HOM05D006146 ORTHO05D007924 5.5e-123 445.7 590 47.3
Sabra16G0115900 Salix brachista HOM05D006146 ORTHO05D007924 6.0e-122 442.2 559 50.8
CSS0039643 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.1e-120 438.0 505 51.5
Glyma.16G098700 Glycine max HOM05D006146 ORTHO05D007924 2.5e-120 436.8 381 60.4
Os03g0293000 Oryza sativa ssp. japonica HOM05D006146 ORTHO05D007924 2.5e-120 436.8 493 48.5
SEGI_31782 Sequoiadendron giganteum HOM05D006146 ORTHO05D007924 1.8e-105 387.5 586 39.6
Hma1.2p1_0362F.1_g136590 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 1.8e-102 377.5 275 67.3
CSS0031746 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 4.5e-101 372.9 543 45.3
Hma1.2p1_0362F.1_g136580 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 1.1e-99 368.2 288 64.2
CSS0015893 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 8.8e-97 358.6 486 46.1
Hund10973 Selenicereus undatus HOM05D006146 ORTHO05D007924 1.8e-89 334.3 366 51.6
CSS0011042 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.3e-87 328.2 485 44.1
QL08p015836 Quercus lobata HOM05D006146 ORTHO05D007924 2.0e-85 320.9 319 55.2
CSS0030843 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.6e-80 303.9 437 44.6
FAN09G2516 Fragaria x ananassa HOM05D006146 ORTHO05D007924 6.8e-73 279.3 215 66.5
Cpa.g.sc120.50 Carica papaya HOM05D006146 ORTHO05D007924 6.6e-68 262.7 213 64.8
Mapoly0184s0019 Marchantia polymorpha HOM05D006146 ORTHO05D007924 1.1e-67 261.9 594 31.3
Pp3c20_14730 Physcomitrium patens HOM05D006146 ORTHO05D007924 2.5e-67 260.8 597 30.8
SMO347G0184 Selaginella moellendorffii HOM05D006146 ORTHO05D007924 8.9e-65 252.3 578 31.8
Hund10972 Selenicereus undatus HOM05D006146 ORTHO05D007924 1.5e-64 251.5 214 60.3
AagrBONN_evm.TU.Sc2ySwM_228.96 Anthoceros agrestis HOM05D006146 ORTHO05D007924 3.9e-60 236.9 376 34.0
Zm00001eb225170 Zea mays HOM05D006146 ORTHO05D007924 7.1e-38 162.9 162 53.7
Zm00001eb032720 Zea mays HOM05D006146 ORTHO05D007924 9.3e-30 136.0 173 45.7
CBR_g38983 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-27 129.0 500 24.4
Haze_20655 Corylus avellana HOM05D006146 ORTHO05D007924 1.6e-26 125.2 213 41.8
Thecc.05G011800 Theobroma cacao HOM05D006146 ORTHO05D007924 6.6e-20 103.2 79 62.0
Rhsim01G0279400 Rhododendron simsii HOM05D000036 ORTHO05D005472 2.6e-16 91.3 74 54.1
Rhsim05G0215400 Rhododendron simsii HOM05D000003 ORTHO05D000004 9.9e-16 89.4 106 43.4
QL07p034801 Quercus lobata HOM05D006146 ORTHO05D007924 1.3e-12 79.0 62 61.3
MCO15G148 Micromonas commoda HOM05D000367 ORTHO05D034452 2.4e-09 68.2 422 24.9
vmacro12345 Vaccinium macrocarpon HOM05D000175 ORTHO05D000481 2.0e-08 65.1 160 33.8
Rhsim05G0219400 Rhododendron simsii HOM05D006146 ORTHO05D007924 1.0e-07 62.8 58 50.0
unitig_899.g15083 Utricularia gibba HOM05D003863 ORTHO05D004372 4.9e-07 60.5 47 61.7
MSTRG.18560 Avicennia marina HOM05D006731 ORTHO05D007597 8.4e-07 59.7 46 58.7
Os05g0562300 Oryza sativa ssp. japonica HOM05D000175 ORTHO05D000481 1.1e-06 59.3 107 39.3
Atru.chr7.1222 Acer truncatum HOM05D001406 ORTHO05D002467 2.5e-06 58.2 45 57.8
Aa31LG1G11940 Aethionema arabicum HOM05D006731 ORTHO05D007597 4.2e-06 57.4 46 54.3
AUR62018081 Chenopodium quinoa HOM05D001406 ORTHO05D002467 4.2e-06 57.4 46 58.7
AUR62040368 Chenopodium quinoa HOM05D001406 ORTHO05D002467 4.2e-06 57.4 46 58.7
SEGI_32676 Sequoiadendron giganteum HOM05D001406 ORTHO05D002467 4.2e-06 57.4 42 64.3
Sopen09g009010 Solanum pennellii HOM05D006731 ORTHO05D007597 4.2e-06 57.4 46 54.3
PGSC0003DMG401006496 Solanum tuberosum HOM05D006731 ORTHO05D007597 4.2e-06 57.4 46 56.5
Actinidia08539 Actinidia chinensis HOM05D006731 ORTHO05D007597 5.5e-06 57.0 41 61.0
Migut.D00883 Erythranthe guttata HOM05D006731 ORTHO05D007597 5.5e-06 57.0 82 42.7
Peaxi162Scf00845g00119 Petunia axillaris HOM05D000175 ORTHO05D000481 5.5e-06 57.0 158 34.2
SEGI_39155 Sequoiadendron giganteum HOM05D001406 ORTHO05D002467 5.5e-06 57.0 45 55.6
Solyc09g015360.4 Solanum lycopersicum HOM05D006731 ORTHO05D007597 5.5e-06 57.0 46 56.5
THA.LOC104810758 Tarenaya hassleriana HOM05D006731 ORTHO05D007597 5.5e-06 57.0 46 56.5
Zm00001eb295770 Zea mays HOM05D000175 ORTHO05D000481 5.5e-06 57.0 155 32.3
Mapoly0005s0205 Marchantia polymorpha HOM05D003863 ORTHO05D004372 7.1e-06 56.6 43 60.5
Sed0012402 Sechium edule HOM05D000367 ORTHO05D001438 7.1e-06 56.6 52 55.8
SEGI_03407 Sequoiadendron giganteum HOM05D003863 ORTHO05D004372 7.1e-06 56.6 41 65.9
AagrBONN_evm.TU.Sc2ySwM_344.1005 Anthoceros agrestis HOM05D001406 ORTHO05D002467 9.3e-06 56.2 45 53.3
MSTRG.10101 Avicennia marina HOM05D001406 ORTHO05D002467 9.3e-06 56.2 51 54.9
Haze_26522 Corylus avellana HOM05D000175 ORTHO05D000481 9.3e-06 56.2 94 37.2
Dinv40601 Davidia involucrata HOM05D000175 ORTHO05D000481 9.3e-06 56.2 107 37.4
FAN26G3043 Fragaria x ananassa HOM05D001406 ORTHO05D002467 9.3e-06 56.2 56 44.6
Nn3g21477 Nelumbo nucifera HOM05D001406 ORTHO05D002467 9.3e-06 56.2 45 57.8
Nitab4.5_0005191g0060 Nicotiana tabacum HOM05D000175 ORTHO05D000481 9.3e-06 56.2 153 34.0
Sc06g0008350 Simmondsia chinensis HOM05D006731 ORTHO05D007597 9.3e-06 56.2 46 56.5
unitig_736.g22293 Utricularia gibba HOM05D003863 ORTHO05D004372 9.3e-06 56.2 47 59.6
Zm00001eb343630 Zea mays HOM05D000175 ORTHO05D000481 9.3e-06 56.2 157 31.8


User provided reference genes

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