Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.5e-72 274.6 153 100.0
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.5e-48 195.3 152 73.7
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-44 183.7 142 74.6
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-39 167.2 152 67.1
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.9e-39 165.6 150 66.7
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.6e-39 164.5 150 66.7
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.5e-35 153.3 152 60.5
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.3e-34 150.2 155 64.5
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 1.4e-33 146.7 159 57.9
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 7.0e-33 144.4 149 57.7
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 5.9e-32 141.4 154 53.2
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 3.0e-31 139.0 147 55.8
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 6.6e-31 137.9 156 56.4
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.8e-27 124.0 164 52.4
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.9e-26 122.5 157 49.7
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.3e-26 120.9 149 48.3
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.7e-24 115.9 161 52.2
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 3.5e-24 115.5 157 50.3
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 6.0e-24 114.8 153 49.7
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.3e-23 113.6 145 47.6
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.3e-23 113.6 154 48.7
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 3.0e-23 112.5 155 49.7
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 3.0e-23 112.5 165 46.1
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 1.5e-22 110.2 155 47.7
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 4.3e-22 108.6 167 43.7
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 4.3e-22 108.6 154 46.1
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 1.2e-21 107.1 147 48.3
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.6e-21 106.7 145 48.3
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.6e-21 106.7 152 44.1
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.8e-21 105.9 155 45.2
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 4.7e-21 105.1 157 47.8
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 4.7e-21 105.1 148 45.9
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 4.7e-21 105.1 155 46.5
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 4.7e-21 105.1 150 46.0
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 1.1e-20 104.0 144 48.6
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 1.1e-20 104.0 143 49.0
Nitab4.5_0000194g0070 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-20 103.2 71 77.5
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.3e-20 102.8 149 43.0
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 3.1e-20 102.4 149 43.0
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.1e-20 102.4 149 43.0
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 3.1e-20 102.4 161 44.7
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.0e-20 102.1 148 43.2
Nitab4.5_0000194g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.0e-20 102.1 72 75.0
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.8e-20 101.3 158 47.5
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.8e-20 101.3 148 46.6
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.8e-20 101.3 148 46.6
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 6.8e-20 101.3 155 45.2
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 2.6e-19 99.4 149 44.3
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 9.8e-19 97.4 123 51.2
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.3e-18 97.1 151 44.4
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-18 96.7 150 42.0
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 2.2e-18 96.3 119 48.7
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.9e-18 95.9 113 49.6
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 2.9e-18 95.9 155 45.2
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 3.7e-18 95.5 155 42.6
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 3.7e-18 95.5 148 45.3
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 3.7e-18 95.5 148 44.6
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 3.7e-18 95.5 146 44.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 4.9e-18 95.1 159 44.0
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 6.4e-18 94.7 120 45.8
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 8.3e-18 94.4 160 43.1
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 1.1e-17 94.0 141 40.4
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.4e-17 93.6 113 47.8
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.4e-17 93.6 113 47.8
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.9e-17 93.2 154 44.8
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-17 92.8 137 47.4
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 4.1e-17 92.0 113 48.7
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 4.1e-17 92.0 153 42.5
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 7.1e-17 91.3 120 43.3
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 7.1e-17 91.3 150 38.7
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 7.1e-17 91.3 150 38.7
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 9.2e-17 90.9 144 47.9
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 9.2e-17 90.9 162 41.4
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.2e-16 90.5 157 43.3
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.2e-16 90.5 142 44.4
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 1.2e-16 90.5 141 42.6
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.6e-16 90.1 159 45.9
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.1e-16 89.7 153 43.1
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 2.1e-16 89.7 114 46.5
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.7e-16 89.4 158 39.9
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 3.5e-16 89.0 146 46.6
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 4.6e-16 88.6 146 43.2
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 4.6e-16 88.6 155 41.3
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 7.8e-16 87.8 148 42.6
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 7.8e-16 87.8 147 43.5
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.8e-16 87.8 149 42.3
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 7.8e-16 87.8 141 42.6
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 1.0e-15 87.4 153 40.5
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.3e-15 86.3 159 45.3
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-15 86.3 148 43.9
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 3.9e-15 85.5 150 42.0
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 5.1e-15 85.1 113 46.0
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 5.1e-15 85.1 146 41.8
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 6.6e-15 84.7 142 46.5
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 8.6e-15 84.3 151 43.0
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-14 84.0 143 45.5
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-14 84.0 148 43.2
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.1e-14 84.0 149 45.0
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.5e-14 83.6 154 37.0
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.5e-14 83.6 140 45.0
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 1.5e-14 83.6 124 44.4
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 1.9e-14 83.2 142 43.7
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-14 83.2 151 43.0
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 5.6e-14 81.6 148 43.2
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 5.6e-14 81.6 148 43.2
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.3e-14 81.3 144 45.1
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 9.5e-14 80.9 151 41.1
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 9.5e-14 80.9 148 43.2
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 9.5e-14 80.9 121 46.3
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-13 80.5 127 43.3
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-13 80.5 148 43.2
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.2e-13 80.5 120 40.0
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 1.2e-13 80.5 159 39.6
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-13 80.1 148 43.2
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-13 79.3 148 42.6
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 3.6e-13 79.0 95 51.6
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 3.6e-13 79.0 148 42.6
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.7e-13 78.6 118 44.1
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 4.7e-13 78.6 155 38.7
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 6.2e-13 78.2 137 44.5
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 6.2e-13 78.2 135 45.9
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 8.1e-13 77.8 154 39.6
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 8.1e-13 77.8 139 42.4
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.4e-12 77.0 146 41.8
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-12 77.0 125 45.6
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 1.4e-12 77.0 151 44.4
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.8e-12 76.6 146 41.8
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 4.0e-12 75.5 135 43.0
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.2e-12 75.1 110 40.9
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 5.2e-12 75.1 129 44.2
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 8.9e-12 74.3 147 40.1
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-11 73.9 149 42.3
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-11 73.2 135 43.0
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 2.0e-11 73.2 112 44.6
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 4.4e-11 72.0 110 40.0
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.2e-10 69.7 158 38.0
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 3.8e-10 68.9 143 38.5
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 4.9e-10 68.6 96 44.8
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 8.4e-10 67.8 154 33.8
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 1.9e-09 66.6 110 38.2
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.9e-09 66.6 134 43.3
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 3.2e-09 65.9 135 37.8
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 3.2e-09 65.9 160 35.6
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 4.1e-09 65.5 129 40.3
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 5.4e-09 65.1 122 40.2
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.2e-08 63.9 167 32.3
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 2.1e-08 63.2 71 54.9
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 2.1e-08 63.2 144 36.1
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.7e-08 62.8 115 43.5
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 3.5e-08 62.4 154 32.5
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 4.6e-08 62.0 141 36.2
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 7.8e-08 61.2 148 35.1
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 7.8e-08 61.2 148 35.1
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 7.8e-08 61.2 139 36.0
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 1.3e-07 60.5 108 43.5
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 1.7e-07 60.1 136 38.2
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 3.9e-07 58.9 157 32.5
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 5.1e-07 58.5 154 35.7
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.1e-07 58.5 101 41.6
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 5.1e-07 58.5 142 33.1
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-06 57.4 132 35.6
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 2.5e-06 56.2 128 38.3
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 2.5e-06 56.2 145 35.2
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 7.3e-06 54.7 116 37.9
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 9.6e-06 54.3 160 30.0
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 9.6e-06 54.3 132 37.1


User provided reference genes

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