Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 2235.3 1123 100.0
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1843.6 1138 83.9
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1809.3 1138 81.5
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1808.1 1138 81.5
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1667.9 1140 76.5
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1295.8 1147 58.1
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1284.2 1146 58.6
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1277.3 1143 57.0
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1275.0 1187 56.3
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1268.4 1147 57.0
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1265.8 1147 57.3
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1256.9 1145 56.3
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1235.7 1153 56.5
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1233.8 1241 53.3
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1228.0 1152 56.6
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1199.1 1135 54.9
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1177.5 1147 54.7
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1177.2 1138 54.5
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1171.0 1137 54.8
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1160.6 1125 55.1
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1160.2 1137 54.8
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1159.1 1135 53.6
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1157.9 1130 53.6
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1152.5 1121 53.6
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1149.0 1135 53.4
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1145.2 1154 52.1
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1144.8 1132 52.9
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1141.7 1170 53.5
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1138.3 1146 52.3
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1136.7 1141 53.2
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1135.6 1158 52.8
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1134.4 1140 53.1
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1131.3 1140 53.0
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1129.0 1139 53.4
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1128.6 1173 51.5
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1128.2 1132 53.3
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1124.0 1128 52.8
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1120.9 1147 52.6
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1120.5 1147 52.7
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1120.1 1135 51.6
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1119.4 1143 51.7
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1119.0 1142 51.9
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1118.2 1220 50.0
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1117.1 1138 52.1
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1116.3 1137 52.2
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1113.6 1140 52.5
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1113.2 1138 52.6
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1113.2 1139 52.4
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1112.1 1135 51.9
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1111.7 1142 51.9
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1110.1 1148 52.5
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1109.4 1138 51.9
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1109.4 1140 52.5
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1103.6 1158 51.2
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1099.7 1139 52.1
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1096.6 1158 51.0
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 0.0e+00 1095.1 839 69.7
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1092.4 1168 49.7
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1091.3 1129 50.7
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1090.1 1130 51.2
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1086.6 1133 51.4
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1083.9 1101 51.2
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1083.6 1135 51.5
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1082.8 1133 50.9
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1082.8 1215 51.1
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1080.5 1135 51.4
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1080.1 1145 50.1
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1078.9 1135 51.5
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1077.4 1135 51.5
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 7.7e-312 1074.7 767 73.7
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 7.7e-312 1074.3 1142 50.7
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 7.7e-312 1074.3 1132 51.1
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 7.7e-312 1073.5 1126 51.1
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 3.8e-311 1071.6 1140 49.5
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 1.5e-310 1069.7 1133 50.2
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 7.6e-310 1067.4 1136 50.4
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 2.2e-309 1065.8 1144 49.9
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 6.4e-309 1064.3 1136 50.7
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 2.1e-307 1059.3 1136 50.5
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 1.0e-306 1057.0 1135 49.6
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 1.2e-302 1043.5 1151 48.7
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 1.3e-301 1040.0 1118 48.8
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.6e-299 1033.1 1144 49.4
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 3.9e-298 1028.5 1127 49.3
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 2.5e-297 1025.8 1123 50.6
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 9.6e-297 1023.8 1190 47.5
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 1.2e-291 1006.9 1128 49.0
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 1.5e-286 989.9 1133 46.4
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 1.5e-286 989.9 1133 47.3
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 4.2e-284 981.9 1134 48.0
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 9.1e-271 937.6 1145 43.9
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 7.7e-270 934.5 1019 48.4
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.1e-263 914.1 1134 46.6
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 1.8e-255 886.7 940 50.5
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.4e-242 844.0 1139 43.2
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.8e-242 843.6 1104 42.3
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 5.4e-231 805.4 966 47.7
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 7.8e-214 748.4 949 45.0
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 4.7e-211 739.2 596 60.2
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 8.6e-205 718.4 767 50.6
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 2.1e-203 713.8 1137 37.1
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.3e-197 693.7 508 65.4
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 3.3e-180 636.7 814 43.9
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.1e-178 631.7 351 89.7
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 2.4e-178 630.6 718 49.3
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 3.6e-166 590.1 1114 34.9
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 6.3e-163 579.3 522 56.3
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 9.1e-162 575.5 850 38.9
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.2e-155 554.3 781 40.1
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 6.3e-155 552.7 599 50.9
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.8e-146 524.6 1105 32.6
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.0e-144 518.8 514 52.7
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.7e-142 510.8 944 33.7
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 4.4e-140 503.4 623 46.2
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 1.3e-123 448.7 489 50.3
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 9.8e-116 422.5 449 47.4
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 9.8e-108 396.0 462 45.9
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.7e-107 395.2 353 57.5
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 1.4e-106 392.1 344 57.8
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 5.4e-106 390.2 239 81.6
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.3e-91 342.4 432 44.7
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 4.6e-89 334.0 907 28.0
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 5.6e-79 300.4 236 63.6
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 1.5e-76 292.4 1063 27.6
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.3e-64 252.7 291 49.1
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 3.4e-60 238.0 242 54.1
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 4.9e-59 234.2 213 56.8
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 1.2e-57 229.6 505 33.1
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 9.7e-47 193.4 216 45.8
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.4e-45 189.5 865 24.4
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 9.1e-45 186.8 352 35.5
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 8.5e-43 180.3 152 53.3
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 2.1e-41 175.6 377 33.7
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 2.1e-41 175.6 147 60.5
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 5.1e-40 171.0 125 66.4
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 1.7e-38 166.0 930 24.4
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 3.4e-36 158.3 233 40.8
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 7.2e-34 150.6 189 43.9
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 2.0e-28 132.5 100 67.0
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 5.9e-28 131.0 148 48.6
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 1.5e-23 116.3 85 64.7
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 3.3e-23 115.2 99 59.6
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 4.8e-22 111.3 92 58.7
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 4.1e-21 108.2 167 38.9
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.5e-18 99.8 116 42.2
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.0e-15 89.4 120 49.2
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 1.4e-13 83.2 124 39.5
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 1.8e-13 82.8 102 43.1
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 1.8e-13 82.8 156 33.3
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 5.0e-11 74.7 70 52.9
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 6.6e-11 74.3 70 51.4
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 3.3e-10 72.0 116 37.9
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 1.4e-08 66.6 81 48.1
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 2.3e-08 65.9 37 83.8
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 6.8e-08 64.3 129 30.2


User provided reference genes

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