Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000176g0030 Nicotiana tabacum HOM05D002553 ORTHO05D002767 4.9e-235 817.4 400 100.0
Nitab4.5_0001510g0020 Nicotiana tabacum HOM05D002553 ORTHO05D002767 4.4e-212 741.1 413 88.9
Solyc10g009400.3 Solanum lycopersicum HOM05D002553 ORTHO05D002767 1.7e-171 606.3 406 76.1
Sopen10g005180 Solanum pennellii HOM05D002553 ORTHO05D002767 5.0e-171 604.7 406 75.9
Peaxi162Scf01441g00005 Petunia axillaris HOM05D002553 ORTHO05D002767 5.0e-163 578.2 490 61.8
PGSC0003DMG400018888 Solanum tuberosum HOM05D002553 ORTHO05D002767 2.3e-128 463.0 404 62.9
CSS0035336 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 3.1e-120 436.0 399 58.1
Cc02_g32700 Coffea canephora HOM05D002553 ORTHO05D002767 3.7e-118 429.1 406 56.7
RcHm_v2.0_Chr3g0454111 Rosa chinensis HOM05D002553 ORTHO05D002767 2.8e-113 412.9 402 54.5
TWI56G0412 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 8.1e-113 411.4 404 53.0
DCAR_029434 Daucus carota HOM05D002553 ORTHO05D002767 1.2e-111 407.5 399 53.1
Atru.chr2.474 Acer truncatum HOM05D002553 ORTHO05D002767 1.5e-111 407.1 396 54.8
Migut.M00920 Erythranthe guttata HOM05D002553 ORTHO05D002767 1.3e-110 404.1 406 53.0
Thecc.05G308100 Theobroma cacao HOM05D002553 ORTHO05D002767 3.7e-110 402.5 412 51.0
MD04G1209100 Malus domestica HOM05D002553 ORTHO05D002767 8.3e-110 401.4 411 52.1
Actinidia19805 Actinidia chinensis HOM05D002553 ORTHO05D002767 1.4e-109 400.6 405 53.6
MSTRG.16234 Avicennia marina HOM05D002553 ORTHO05D002767 4.6e-108 395.6 387 54.5
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 4.6e-108 395.6 419 50.4
CiPaw.07G014700 Carya illinoinensis HOM05D002553 ORTHO05D002767 7.8e-108 394.8 418 49.8
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 7.8e-108 394.8 395 53.7
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 1.3e-107 394.0 390 52.8
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.3e-107 394.0 410 50.7
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 6.6e-107 391.7 401 53.1
FvH4_6g05341 Fragaria vesca HOM05D002553 ORTHO05D002767 2.5e-106 389.8 412 51.0
Haze_04234 Corylus avellana HOM05D002553 ORTHO05D002767 4.3e-106 389.0 394 53.0
QL03p004484 Quercus lobata HOM05D002553 ORTHO05D002767 2.1e-105 386.7 471 46.5
arahy.Tifrunner.gnm1.ann1.NG2XET Arachis hypogaea HOM05D002553 ORTHO05D002767 4.7e-105 385.6 401 51.9
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 4.7e-105 385.6 430 49.8
Phvul.006G093922 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 4.7e-105 385.6 399 49.9
Glyma.19G237200 Glycine max HOM05D002553 ORTHO05D002767 6.2e-105 385.2 399 50.9
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.4e-104 384.0 400 51.2
Gorai.004G243500 Gossypium raimondii HOM05D002553 ORTHO05D002767 2.3e-104 383.3 423 49.6
Lalb_Chr15g0077101 Lupinus albus HOM05D002553 ORTHO05D002767 3.1e-104 382.9 404 52.0
Potri.005G039000 Populus trichocarpa HOM05D002553 ORTHO05D002767 6.8e-104 381.7 429 49.9
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 8.9e-104 381.3 400 50.5
Gohir.D08G229300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 1.5e-103 380.6 404 50.0
HanXRQChr14g0445961 Helianthus annuus HOM05D002553 ORTHO05D002767 2.6e-103 379.8 393 52.9
PGR031G3980 Punica granatum HOM05D002553 ORTHO05D002767 3.4e-103 379.4 389 53.2
Lj1g0019778 Lotus japonicus HOM05D002553 ORTHO05D002767 2.9e-102 376.3 397 49.4
Phvul.006G093933 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 2.9e-102 376.3 399 49.6
arahy.Tifrunner.gnm1.ann1.Y4B2Z0 Arachis hypogaea HOM05D002553 ORTHO05D002767 3.7e-102 375.9 418 49.3
Psat3g010200 Pisum sativum HOM05D002553 ORTHO05D002767 8.4e-102 374.8 408 48.8
Aqoxy1G02454 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 1.4e-101 374.0 429 48.0
Ca_09373_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 2.4e-101 373.2 396 49.0
Rhsim05G0144400 Rhododendron simsii HOM05D002553 ORTHO05D002767 3.5e-100 369.4 407 51.1
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 7.8e-100 368.2 395 50.1
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 3.9e-99 365.9 398 48.7
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 5.1e-99 365.5 429 49.9
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 1.5e-98 364.0 429 49.4
VMungo0540G2049 Vigna mungo HOM05D002553 ORTHO05D002767 1.9e-98 363.6 394 49.2
Carub.0006s2514 Capsella rubella HOM05D002553 ORTHO05D002767 4.3e-98 362.5 398 49.7
ECA238G2267 Erigeron canadensis HOM05D002553 ORTHO05D002767 4.3e-98 362.5 404 49.3
Medtr7g113850 Medicago truncatula HOM05D002553 ORTHO05D002767 7.3e-98 361.7 394 48.0
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 4.7e-97 359.0 406 48.0
TPR.G33193 Trifolium pratense HOM05D002553 ORTHO05D002767 4.0e-96 355.9 369 49.9
BcaNung02464 Brassica carinata HOM05D002553 ORTHO05D002767 6.8e-96 355.1 398 49.2
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 1.2e-95 354.4 400 50.5
COL.COLO4_13516 Corchorus olitorius HOM05D002553 ORTHO05D002767 2.0e-95 353.6 343 52.5
CANSAT25G3036 Cannabis sativa HOM05D002553 ORTHO05D002767 4.4e-95 352.4 399 48.4
SGA_v2.0_scaffold1G00162 Striga asiatica HOM05D002553 ORTHO05D002767 9.9e-95 351.3 405 49.1
Lsat_1_v5_gn_2_67941 Lactuca sativa HOM05D002553 ORTHO05D002767 2.9e-94 349.7 377 49.9
Sp2g20630 Schrenkiella parvula HOM05D002553 ORTHO05D002767 6.4e-94 348.6 398 49.0
TAR633G1107 Trochodendron aralioides HOM05D002553 ORTHO05D002767 6.4e-94 348.6 370 50.8
AUR62000868 Chenopodium quinoa HOM05D002553 ORTHO05D002767 8.4e-94 348.2 391 48.6
AT5G27400 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 1.1e-93 347.8 398 50.3
Cpa.g.sc48.13 Carica papaya HOM05D002553 ORTHO05D002767 1.4e-93 347.4 350 54.0
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.9e-93 347.1 389 47.8
Aa31LG11G9180 Aethionema arabicum HOM05D002553 ORTHO05D002767 2.4e-93 346.7 395 48.4
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 4.2e-93 345.9 397 48.1
Oeu057684.1 Olea europaea HOM05D002553 ORTHO05D002767 7.1e-93 345.1 397 50.1
Prupe.6G330100 Prunus persica HOM05D002553 ORTHO05D002767 6.0e-92 342.0 355 51.8
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 2.3e-91 340.1 386 49.5
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 2.3e-91 340.1 386 49.5
ATR0626G345 Amborella trichopoda HOM05D002553 ORTHO05D002767 6.6e-91 338.6 434 46.3
Hund07046 Selenicereus undatus HOM05D002553 ORTHO05D002767 4.3e-90 335.9 389 49.9
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 2.1e-89 333.6 404 48.8
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 2.1e-89 333.6 386 49.5
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 4.8e-89 332.4 404 47.5
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 1.1e-88 331.3 393 48.6
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 1.1e-88 331.3 393 48.6
Dinv40259 Davidia involucrata HOM05D002553 ORTHO05D002767 2.4e-88 330.1 265 61.9
Sabra05G0037600 Salix brachista HOM05D002553 ORTHO05D002767 4.9e-86 322.4 574 36.8
Hma1.2p1_0666F.1_g199460 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 1.9e-85 320.5 282 61.0
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 3.1e-80 303.1 426 43.7
HPP92_017205 Vanilla planifolia HOM05D002553 ORTHO05D002767 2.2e-78 297.0 396 43.4
Gohir.A08G212300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 1.1e-77 294.7 313 50.2
AUR62005108 Chenopodium quinoa HOM05D002553 ORTHO05D002767 1.2e-76 291.2 340 46.5
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 5.6e-74 282.3 396 43.4
Lj7C475G4 Lonicera japonica HOM05D002553 ORTHO05D002767 5.6e-74 282.3 387 44.2
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 5.3e-72 275.8 384 44.3
Zm00001eb417780 Zea mays HOM05D002553 ORTHO05D002767 3.8e-70 269.6 400 39.8
Nn1g02088 Nelumbo nucifera HOM05D002553 ORTHO05D002767 8.4e-70 268.5 410 42.2
unitig_32.g11004 Utricularia gibba HOM05D002553 ORTHO05D002767 1.8e-59 234.2 412 38.3
CAN.G271.6 Capsicum annuum HOM05D000541 ORTHO05D000137 2.3e-59 233.8 169 71.0
Pp3c27_4830 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.5e-55 221.1 402 34.3
Mapoly0153s0022 Marchantia polymorpha HOM05D002553 ORTHO05D002767 1.3e-54 218.0 405 35.1
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 5.1e-51 206.1 275 47.3
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 2.2e-49 200.7 383 33.4
vmacro19642 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 2.2e-46 190.7 235 48.1
CAN.G271.7 Capsicum annuum HOM05D002553 ORTHO05D002767 1.0e-38 165.2 101 76.2
Pp3c6_24550 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.5e-37 161.4 337 34.1
vmacro19643 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 1.0e-35 155.2 195 45.6
Glyma.03G240200 Glycine max HOM05D002553 ORTHO05D002767 6.5e-30 136.0 166 44.0
SalBow8G2918 Salvia bowleyana HOM05D002553 ORTHO05D002767 1.4e-27 128.3 178 41.0
CSS0028745 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 4.4e-26 123.2 137 48.9
CSS0010777 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 1.9e-21 107.8 102 55.9
SEGI_18575 Sequoiadendron giganteum HOM05D002553 ORTHO05D002767 7.2e-21 105.9 168 39.9
AagrBONN_evm.TU.Sc2ySwM_368.1399 Anthoceros agrestis HOM05D002553 ORTHO05D002767 3.0e-19 100.5 179 33.0
CBR_g66786 Chara braunii HOM05D002553 ORTHO05D002767 1.4e-16 91.7 215 29.3
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 2.8e-12 77.4 166 33.7
Os05g0143200 Oryza sativa ssp. japonica HOM05D002553 ORTHO05D002767 1.4e-11 75.1 80 47.5
MCO08G105 Micromonas commoda HOM05D002553 ORTHO05D002767 1.4e-08 65.1 169 25.4
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 5.4e-08 63.2 196 27.6
Ciclev10024563m.g Citrus clementina HOM05D001602 ORTHO05D001470 2.7e-07 60.8 167 32.3
Cc00_g15860 Coffea canephora HOM05D001602 ORTHO05D001470 3.5e-07 60.5 162 29.6
Atru.chr2.263 Acer truncatum HOM05D001602 ORTHO05D001470 4.6e-07 60.1 167 32.3
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 4.6e-07 60.1 162 32.1
Lj6g0022582 Lotus japonicus HOM05D002956 ORTHO05D008031 4.6e-07 60.1 145 30.3
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 4.6e-07 60.1 151 32.5
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 5.9e-07 59.7 182 30.2
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 5.9e-07 59.7 181 29.3
FvH4_5g18590 Fragaria vesca HOM05D001602 ORTHO05D001470 1.0e-06 58.9 178 29.8
FAN18G2659 Fragaria x ananassa HOM05D000219 ORTHO05D000226 1.0e-06 58.9 178 29.8
Hma1.2p1_0816F.1_g223000 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 1.0e-06 58.9 137 35.8
Lj2g0019069 Lotus japonicus HOM05D001602 ORTHO05D001470 1.0e-06 58.9 137 32.8
SalBow2G2154 Salvia bowleyana HOM05D001602 ORTHO05D001470 1.0e-06 58.9 137 34.3
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 1.0e-06 58.9 139 30.9
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 1.3e-06 58.5 193 26.9
Prupe.5G245300 Prunus persica HOM05D001602 ORTHO05D001470 1.3e-06 58.5 123 35.0
PGR044G0265 Punica granatum HOM05D001602 ORTHO05D001470 1.7e-06 58.2 167 33.5
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 2.3e-06 57.8 183 27.9
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 2.3e-06 57.8 136 30.1
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 3.0e-06 57.4 118 33.1
Lalb_Chr22g0354061 Lupinus albus HOM05D001602 ORTHO05D001470 3.0e-06 57.4 118 33.1
Oeu027750.2 Olea europaea HOM05D001602 ORTHO05D001470 3.0e-06 57.4 136 32.4
RcHm_v2.0_Chr7g0176921 Rosa chinensis HOM05D001602 ORTHO05D001470 3.0e-06 57.4 180 28.3
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 3.0e-06 57.4 165 27.9
Zm00001eb295360 Zea mays HOM05D001602 ORTHO05D001470 3.0e-06 57.4 124 37.1
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 3.9e-06 57.0 165 27.3
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 3.9e-06 57.0 165 27.3
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 3.9e-06 57.0 165 27.3
Haze_18406 Corylus avellana HOM05D000219 ORTHO05D000226 3.9e-06 57.0 140 32.9
DCAR_005441 Daucus carota HOM05D001602 ORTHO05D001470 3.9e-06 57.0 172 32.6
FAN13G1167 Fragaria x ananassa HOM05D001602 ORTHO05D001470 3.9e-06 57.0 178 29.8
Gohir.D12G086700 Gossypium hirsutum HOM05D001602 ORTHO05D001470 3.9e-06 57.0 162 29.0
Gorai.008G096900 Gossypium raimondii HOM05D001602 ORTHO05D001470 3.9e-06 57.0 162 29.0
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 3.9e-06 57.0 182 29.1
VMungo0464G1375 Vigna mungo HOM05D001602 ORTHO05D001470 3.9e-06 57.0 138 30.4
C06p34070 Brassica napus HOM05D001602 ORTHO05D001470 5.0e-06 56.6 140 32.9
FAN04G0471 Fragaria x ananassa HOM05D001602 ORTHO05D001470 5.0e-06 56.6 178 29.8
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 5.0e-06 56.6 119 30.3
Phvul.004G136600 Phaseolus vulgaris HOM05D001602 ORTHO05D001470 5.0e-06 56.6 138 30.4
Actinidia34680 Actinidia chinensis HOM05D001602 ORTHO05D001470 6.6e-06 56.2 192 27.6
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 6.6e-06 56.2 165 28.5
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 6.6e-06 56.2 84 38.1
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 6.6e-06 56.2 165 27.3
BolC6t38522H Brassica oleracea HOM05D001602 ORTHO05D001470 6.6e-06 56.2 140 32.9
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 6.6e-06 56.2 138 29.7
Glyma.16G128200 Glycine max HOM05D001602 ORTHO05D001470 6.6e-06 56.2 138 30.4
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 6.6e-06 56.2 138 29.0
TPR.G31348 Trifolium pratense HOM05D001602 ORTHO05D001470 6.6e-06 56.2 132 30.3
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 8.6e-06 55.8 170 25.9
Nn3g18545 Nelumbo nucifera HOM05D001602 ORTHO05D001470 8.6e-06 55.8 119 33.6
Sp5g28250 Schrenkiella parvula HOM05D001602 ORTHO05D001470 8.6e-06 55.8 144 35.4


User provided reference genes

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