Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.5e-240 835.9 441 100.0
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 9.9e-213 743.4 442 90.0
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 1.8e-190 669.5 440 80.5
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 3.5e-170 602.1 443 77.2
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 3.2e-131 472.6 448 61.4
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 8.6e-124 448.0 445 58.7
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 3.3e-123 446.0 445 58.4
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 4.4e-120 435.6 435 56.8
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 4.1e-118 429.1 399 61.9
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.6e-117 427.2 421 58.2
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 1.9e-115 420.2 445 55.5
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 4.9e-111 405.6 445 54.6
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 6.4e-111 405.2 421 56.5
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 8.3e-111 404.8 454 53.3
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.3e-108 397.5 457 54.0
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 1.6e-106 390.6 463 52.5
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 1.7e-103 380.6 458 52.0
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.4e-102 377.5 443 53.0
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.9e-102 377.1 390 57.2
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 9.2e-102 374.8 443 51.5
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.2e-101 374.4 449 53.7
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.2e-101 374.4 441 53.7
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.7e-101 373.2 440 53.4
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.7e-101 373.2 440 53.4
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 2.3e-100 370.2 467 47.5
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 1.9e-99 367.1 456 51.5
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 4.3e-99 365.9 464 47.8
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 7.3e-99 365.2 439 49.9
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.2e-98 364.4 451 49.7
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 1.2e-98 364.4 463 49.5
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.6e-98 364.0 455 48.8
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 2.8e-98 363.2 437 51.5
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 4.7e-98 362.5 414 53.6
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.8e-97 360.5 471 50.1
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 5.2e-97 359.0 467 49.0
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 8.9e-97 358.2 441 49.0
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 8.9e-97 358.2 431 52.7
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 2.6e-96 356.7 469 48.4
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 7.6e-96 355.1 452 50.9
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 7.6e-96 355.1 450 51.1
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 1.3e-95 354.4 479 48.6
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 1.4e-94 350.9 456 49.1
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 2.4e-94 350.1 448 48.7
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 5.4e-94 349.0 418 50.2
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.5e-93 346.3 458 48.3
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 7.8e-93 345.1 399 53.1
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 5.1e-92 342.4 441 48.3
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 4.3e-91 339.3 465 47.3
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 4.3e-91 339.3 441 48.8
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 5.6e-91 339.0 468 47.4
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 7.3e-91 338.6 414 50.5
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.2e-90 337.8 484 46.7
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 1.6e-90 337.4 439 47.8
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 1.8e-89 334.0 468 46.6
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 3.1e-89 333.2 429 49.9
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 8.9e-89 331.6 496 45.6
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.6e-88 330.1 445 46.5
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 3.4e-88 329.7 426 47.2
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 1.3e-87 327.8 443 47.6
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 6.4e-87 325.5 452 45.6
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 1.2e-85 321.2 439 46.7
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 7.8e-85 318.5 402 50.0
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 1.5e-83 314.3 444 47.7
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.6e-82 310.8 449 46.3
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 6.2e-82 308.9 451 46.6
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 8.1e-82 308.5 432 46.3
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 3.4e-80 303.1 440 45.5
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 9.9e-80 301.6 500 41.4
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.8e-79 299.7 466 43.6
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 4.9e-79 299.3 344 52.3
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 8.4e-79 298.5 467 45.6
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 3.2e-78 296.6 453 45.0
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 9.3e-78 295.0 442 44.1
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.1e-77 293.9 414 45.7
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 2.7e-77 293.5 450 44.7
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.3e-76 290.4 383 46.7
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.0e-76 290.0 413 45.5
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 5.1e-76 289.3 445 42.5
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 1.8e-73 280.8 383 44.4
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 5.3e-73 279.3 468 41.9
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 9.0e-73 278.5 320 53.4
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.5e-72 277.7 450 42.4
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.4e-70 270.4 452 42.0
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 5.4e-70 269.2 450 41.6
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 2.7e-69 266.9 455 40.7
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 3.9e-68 263.1 295 51.2
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 6.7e-68 262.3 460 40.4
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 8.7e-68 261.9 391 43.2
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 6.9e-65 252.3 425 44.2
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 5.8e-64 249.2 410 43.9
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.0e-63 248.4 449 40.5
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 2.2e-63 247.3 468 39.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.9e-63 246.1 351 46.7
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 2.5e-62 243.8 382 42.4
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.5e-62 243.8 341 46.0
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.2e-62 243.0 358 44.4
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 1.2e-61 241.5 451 39.7
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 1.3e-60 238.0 440 38.6
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 2.5e-59 233.8 404 41.1
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 4.3e-59 233.0 465 38.3
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 3.7e-58 229.9 454 39.9
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 1.1e-57 228.4 468 39.3
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 3.4e-56 223.4 407 42.0
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 6.5e-55 219.2 433 38.3
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.4e-54 218.0 430 37.2
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.4e-54 218.0 430 37.2
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 2.5e-54 217.2 340 42.4
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 2.1e-53 214.2 389 40.6
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 4.6e-53 213.0 364 39.0
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.0e-52 210.3 296 47.0
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 3.3e-51 206.8 418 40.2
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 3.4e-48 196.8 339 42.2
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 8.5e-47 192.2 303 41.9
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 2.5e-46 190.7 334 40.7
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 9.4e-46 188.7 206 53.4
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 3.6e-45 186.8 253 47.4
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 1.8e-44 184.5 310 40.0
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 1.5e-43 181.4 249 47.0
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 9.7e-43 178.7 267 42.7
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 1.4e-41 174.9 269 44.6
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.3e-39 168.3 234 47.9
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.7e-39 167.9 154 59.1
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 5.5e-38 162.9 222 47.7
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 5.1e-36 156.4 192 49.0
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.4e-33 148.3 142 57.7
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 2.4e-33 147.5 159 54.1
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 9.4e-30 135.6 150 51.3
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 2.1e-29 134.4 187 48.1
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 8.0e-29 132.5 159 53.5
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.0e-27 127.9 207 43.5
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 1.1e-25 122.1 489 28.0
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 3.8e-23 113.6 88 69.3
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.8e-17 94.7 88 55.7
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.2e-11 75.5 92 44.6
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.0e-11 74.7 101 43.6
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.4e-11 73.9 92 46.7
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 7.0e-09 66.2 102 38.2
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.0e-08 64.7 86 45.3
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 2.0e-08 64.7 295 24.7
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 3.5e-08 63.9 161 32.3


User provided reference genes

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