Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 2.4e-108 395.6 209 100.0
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 2.5e-89 332.4 185 96.8
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 1.7e-85 319.7 185 94.1
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 2.8e-77 292.4 185 84.3
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 1.4e-76 290.0 185 82.7
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 1.8e-76 289.7 185 83.2
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 3.5e-75 285.4 190 80.5
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 2.0e-70 269.6 191 77.0
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 5.8e-70 268.1 191 77.0
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 5.8e-70 268.1 191 77.0
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 5.8e-70 268.1 190 75.3
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 1.7e-69 266.5 182 75.8
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 1.7e-69 266.5 182 75.8
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 1.7e-69 266.5 182 75.8
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 1.7e-69 266.5 182 75.8
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 3.7e-69 265.4 183 77.0
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 8.3e-69 264.2 182 75.3
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 8.3e-69 264.2 182 75.3
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 8.3e-69 264.2 190 74.7
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 1.4e-68 263.5 205 70.2
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 1.9e-68 263.1 190 74.7
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 4.1e-68 261.9 182 74.7
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 4.1e-68 261.9 190 74.7
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 4.1e-68 261.9 190 74.2
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 4.1e-68 261.9 191 73.8
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 7.0e-68 261.2 188 75.5
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 1.2e-67 260.4 189 73.0
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 1.2e-67 260.4 176 78.4
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 1.2e-67 260.4 189 75.7
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 1.6e-67 260.0 186 75.3
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 1.6e-67 260.0 188 76.1
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 2.7e-67 259.2 182 74.7
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 2.7e-67 259.2 190 72.1
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 3.5e-67 258.8 164 81.1
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 4.6e-67 258.5 194 75.8
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 4.6e-67 258.5 185 74.6
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 6.0e-67 258.1 190 74.7
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 6.0e-67 258.1 183 74.9
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 1.0e-66 257.3 190 72.1
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 1.3e-66 256.9 185 74.1
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 1.7e-66 256.5 185 74.6
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 1.7e-66 256.5 186 74.2
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 3.0e-66 255.8 190 74.2
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 3.9e-66 255.4 182 72.5
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 5.0e-66 255.0 191 72.3
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 6.6e-66 254.6 161 79.5
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 6.6e-66 254.6 185 73.5
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 8.6e-66 254.2 182 72.0
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 8.6e-66 254.2 185 73.0
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 8.6e-66 254.2 170 77.6
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 8.6e-66 254.2 154 83.8
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 1.1e-65 253.8 188 74.5
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 1.5e-65 253.4 183 75.4
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 2.5e-65 252.7 196 73.5
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 3.3e-65 252.3 184 70.7
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 4.3e-65 251.9 189 74.6
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 5.6e-65 251.5 185 73.5
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 5.6e-65 251.5 161 78.3
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 7.3e-65 251.1 196 73.5
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 9.5e-65 250.8 154 83.8
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 1.2e-64 250.4 181 74.0
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 2.1e-64 249.6 199 69.3
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 2.1e-64 249.6 189 73.5
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 2.1e-64 249.6 185 71.4
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 2.8e-64 249.2 185 74.6
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 3.6e-64 248.8 154 83.1
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 4.7e-64 248.4 154 81.8
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 6.2e-64 248.1 196 73.0
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 1.8e-63 246.5 164 78.0
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 1.8e-63 246.5 164 77.4
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 1.8e-63 246.5 194 71.6
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 1.8e-63 246.5 185 70.8
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 1.8e-63 246.5 164 79.3
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 2.3e-63 246.1 164 78.0
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 3.1e-63 245.7 181 71.3
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 4.0e-63 245.4 187 72.2
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 5.2e-63 245.0 186 70.4
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 6.8e-63 244.6 195 68.7
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 1.5e-62 243.4 192 71.4
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.5e-62 243.4 195 68.2
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.5e-62 243.4 195 68.2
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 1.5e-62 243.4 184 69.0
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 2.6e-62 242.7 195 68.2
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.6e-62 242.7 195 68.2
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 2.6e-62 242.7 191 69.1
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 2.6e-62 242.7 164 75.6
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 2.6e-62 242.7 183 70.5
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 5.8e-62 241.5 183 70.5
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 7.5e-62 241.1 190 69.5
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 7.5e-62 241.1 185 70.3
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 9.8e-62 240.7 195 67.2
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 1.3e-61 240.4 142 85.9
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 1.7e-61 240.0 185 71.4
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 1.7e-61 240.0 183 69.9
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 2.9e-61 239.2 189 69.3
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 6.4e-61 238.0 186 68.8
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 8.6e-58 227.6 147 81.0
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 2.8e-56 222.6 159 70.4
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 7.6e-46 188.0 158 60.8
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 1.4e-44 183.7 153 57.5
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 2.8e-40 169.5 152 57.2
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 1.4e-39 167.2 141 68.8
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.3e-37 160.6 154 52.6
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.3e-37 160.6 154 52.6
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.7e-37 160.2 154 51.3
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 6.4e-37 158.3 97 83.5
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 8.4e-37 157.9 102 82.4
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 8.4e-37 157.9 195 45.6
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 7.1e-36 154.8 153 50.3
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 2.7e-35 152.9 95 84.2
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 3.9e-34 149.1 86 91.9
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 2.4e-31 139.8 95 77.9
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 1.1e-28 131.0 103 70.9
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 2.5e-25 119.8 82 78.0
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 1.8e-23 113.6 82 69.5
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 2.0e-22 110.2 93 62.4
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 2.9e-21 106.3 155 39.4
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 1.9e-20 103.6 168 33.3
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 3.2e-20 102.8 63 82.5
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 5.1e-18 95.5 167 31.1
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 3.3e-17 92.8 91 59.3
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 3.4e-14 82.8 80 60.0
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 5.8e-14 82.0 105 45.7
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 3.9e-10 69.3 148 30.4
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 1.1e-09 67.8 120 36.7
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 7.4e-09 65.1 37 78.4
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 2.2e-08 63.5 64 50.0
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 6.9e-07 58.5 182 27.5
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 1.5e-06 57.4 207 25.6
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 3.4e-06 56.2 165 30.3


User provided reference genes

Program Settings