Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.2e-117 424.1 205 100.0
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 3.3e-38 162.5 165 57.6
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.2e-33 144.8 88 81.8
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.6e-30 136.3 75 86.7
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.4e-28 130.6 79 82.3
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.4e-28 130.6 79 82.3
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 1.4e-28 130.6 79 82.3
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 1.6e-27 127.1 81 77.8
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 2.7e-27 126.3 79 79.7
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 2.7e-27 126.3 79 79.7
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 3.5e-27 125.9 81 79.0
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 3.5e-27 125.9 81 79.0
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 3.5e-27 125.9 81 79.0
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 4.5e-27 125.6 79 78.5
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 5.9e-27 125.2 79 78.5
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 5.9e-27 125.2 79 78.5
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 5.9e-27 125.2 79 78.5
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 7.7e-27 124.8 79 78.5
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.3e-26 124.0 79 78.5
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.3e-26 124.0 79 78.5
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 1.7e-26 123.6 79 79.7
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 3.8e-26 122.5 79 78.5
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 3.8e-26 122.5 79 78.5
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.5e-26 121.3 91 72.5
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 8.5e-26 121.3 79 78.5
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.1e-25 120.9 79 75.9
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.1e-25 120.9 79 75.9
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.1e-25 120.9 79 75.9
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.1e-25 120.9 79 75.9
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.1e-25 120.9 79 75.9
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.1e-25 120.9 79 75.9
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.1e-25 120.9 79 75.9
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.1e-25 120.9 79 75.9
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 1.1e-25 120.9 79 75.9
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 1.1e-25 120.9 79 73.4
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.1e-25 120.9 79 75.9
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.5e-25 120.6 79 75.9
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.5e-25 120.6 79 75.9
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 1.5e-25 120.6 79 78.5
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.5e-25 119.8 79 75.9
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 3.2e-25 119.4 75 78.7
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 3.2e-25 119.4 75 78.7
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 3.2e-25 119.4 75 78.7
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 3.2e-25 119.4 75 78.7
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 5.5e-25 118.6 79 78.5
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 9.4e-25 117.9 89 67.4
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.2e-24 117.5 79 74.7
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.2e-24 117.5 79 74.7
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.2e-24 117.5 81 75.3
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 1.2e-24 117.5 82 76.8
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 1.6e-24 117.1 79 77.2
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 1.6e-24 117.1 79 77.2
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 1.6e-24 117.1 79 77.2
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 1.6e-24 117.1 79 77.2
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.6e-24 117.1 75 80.0
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.6e-24 117.1 79 77.2
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.6e-24 117.1 79 77.2
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 1.6e-24 117.1 79 77.2
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 2.1e-24 116.7 79 77.2
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 2.1e-24 116.7 79 77.2
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 2.1e-24 116.7 79 77.2
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.1e-24 116.7 79 77.2
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 2.1e-24 116.7 79 77.2
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 6.1e-24 115.2 68 83.8
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 8.0e-24 114.8 72 81.9
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 1.4e-23 114.0 79 75.9
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 2.3e-23 113.2 79 75.9
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 2.3e-23 113.2 76 77.6
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 3.0e-23 112.8 75 77.3
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 4.0e-23 112.5 75 74.7
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.8e-23 111.3 70 81.4
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.4e-22 109.4 63 82.5
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 4.1e-20 102.4 79 69.6
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 4.1e-20 102.4 63 79.4
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-19 100.9 75 72.0
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 5.9e-19 98.6 63 77.8
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 7.7e-19 98.2 66 77.3
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 6.5e-18 95.1 63 77.8
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 1.9e-17 93.6 63 74.6
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 4.2e-17 92.4 56 80.4
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 9.5e-17 91.3 48 89.6
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 8.0e-16 88.2 50 84.0
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.6e-14 83.2 169 40.2
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.7e-14 82.0 124 43.5
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.7e-14 82.0 63 66.7
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 7.5e-14 81.6 60 70.0
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-13 80.9 49 83.7
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 1.7e-13 80.5 93 55.9
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 1.7e-13 80.5 109 49.5
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 2.2e-13 80.1 50 78.0
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-12 77.4 137 39.4
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.8e-12 77.0 81 56.8
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 1.1e-09 67.8 140 36.4
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.2e-08 64.3 77 41.6
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 1.4e-07 60.8 64 51.6
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 8.9e-07 58.2 69 50.7


User provided reference genes

Program Settings