Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 8.9e-157 557.0 301 100.0
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.2e-107 392.9 248 88.3
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 6.7e-104 381.3 258 84.5
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.1e-98 364.0 279 76.0
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 9.4e-98 360.9 286 74.1
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.5e-84 315.8 280 67.9
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 2.2e-83 313.2 222 82.4
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 9.4e-82 307.8 216 82.9
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 5.9e-76 288.5 214 78.5
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 1.7e-70 270.4 200 80.0
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 1.7e-70 270.4 200 80.0
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 2.2e-70 270.0 203 78.3
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 8.3e-70 268.1 225 72.9
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 1.1e-69 267.7 203 78.3
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 1.1e-69 267.7 203 78.3
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 1.1e-69 267.7 203 78.3
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 1.1e-69 267.7 203 78.3
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 1.1e-69 267.7 203 78.3
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 1.1e-69 267.7 203 78.3
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 1.1e-69 267.7 203 78.8
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 1.1e-69 267.7 203 78.8
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 1.1e-69 267.7 203 78.8
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 3.5e-68 262.7 202 78.2
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 3.5e-68 262.7 202 78.2
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 4.5e-68 262.3 203 76.8
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 4.5e-68 262.3 203 76.8
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 4.5e-68 262.3 203 76.8
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 4.5e-68 262.3 203 76.8
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.3e-67 260.0 207 75.8
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.3e-67 260.0 207 75.8
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.3e-67 260.0 207 75.8
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 5.0e-67 258.8 203 75.9
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 5.0e-67 258.8 203 75.9
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 5.0e-67 258.8 203 75.9
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 5.0e-67 258.8 203 75.9
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 6.6e-67 258.5 207 74.9
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 6.6e-67 258.5 210 75.2
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 6.6e-67 258.5 232 69.0
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 6.6e-67 258.5 221 71.5
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 9.5e-66 254.6 203 75.4
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 1.2e-65 254.2 199 77.4
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 2.1e-65 253.4 205 75.6
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 3.6e-65 252.7 219 71.7
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 3.6e-65 252.7 219 71.7
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 4.0e-64 249.2 216 71.8
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.4e-61 240.7 184 75.0
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 4.1e-61 239.2 183 77.6
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 1.1e-58 231.1 187 75.4
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 2.3e-56 223.4 204 67.6
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 6.8e-56 221.9 176 76.1
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 9.2e-53 211.5 199 68.3
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 2.3e-51 206.8 201 65.7
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 2.8e-49 199.9 125 89.6
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 8.1e-49 198.4 125 89.6
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 6.8e-48 195.3 124 88.7
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 8.9e-48 194.9 156 73.1
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.6e-47 193.4 176 69.9
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 2.2e-46 190.3 124 86.3
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.4e-45 185.7 230 57.0
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 1.5e-42 177.6 165 64.8
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 2.5e-42 176.8 119 84.0
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 4.3e-42 176.0 155 68.4
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 7.3e-42 175.3 148 70.3
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.7e-41 172.6 123 82.1
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 2.4e-40 170.2 187 60.4
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 7.1e-37 158.7 103 88.3
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 9.0e-32 141.7 105 81.9
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 9.0e-32 141.7 110 77.3
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 3.5e-28 129.8 89 86.5
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 4.6e-28 129.4 88 87.5
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.5e-23 114.4 134 59.0
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 7.6e-23 112.1 100 65.0
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.6e-18 95.9 55 83.6
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.3e-17 94.7 103 65.0
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.6e-17 94.4 61 83.6
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 1.6e-17 94.4 57 89.5
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 2.0e-15 87.4 51 78.4
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 4.5e-15 86.3 62 79.0
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 6.4e-14 82.4 59 84.7
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 1.0e-11 75.1 64 68.8
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.3e-10 69.7 60 70.0
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 1.6e-09 67.8 89 56.2
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 2.1e-09 67.4 44 86.4
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 2.8e-09 67.0 93 49.5
Nitab4.5_0000172g1670 Nicotiana tabacum HOM05D007838 ORTHO05D009977 2.6e-07 60.5 41 73.2
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 2.2e-06 57.4 37 89.2


User provided reference genes

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