Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.2e-119 431.0 211 100.0
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.0e-90 337.0 281 65.1
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 1.7e-90 336.3 282 64.9
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 4.4e-86 321.6 280 62.9
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 8.3e-85 317.4 271 63.8
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.4e-84 316.6 271 63.5
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 5.4e-84 314.7 282 62.1
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 9.2e-84 313.9 257 66.9
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 7.8e-83 310.8 272 62.9
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.7e-82 309.7 282 61.3
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.7e-82 309.7 280 62.1
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 6.6e-82 307.8 277 62.1
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 8.6e-82 307.4 248 67.3
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.5e-81 305.8 265 64.5
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 8.1e-80 300.8 282 60.3
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 2.4e-79 299.3 277 60.6
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 5.2e-79 298.1 280 59.6
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 6.8e-79 297.7 286 59.8
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.6e-78 295.8 281 59.1
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 4.4e-78 295.0 280 59.3
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 4.4e-78 295.0 282 59.2
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 9.9e-78 293.9 271 60.9
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.2e-77 292.7 284 59.2
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 2.4e-76 289.3 286 59.1
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 7.1e-76 287.7 277 60.3
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 2.1e-75 286.2 285 58.2
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 1.7e-74 283.1 282 58.9
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 3.9e-74 282.0 271 58.7
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 6.6e-74 281.2 282 57.1
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 2.1e-72 276.2 256 59.8
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.4e-70 268.5 268 58.2
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.4e-70 268.5 269 57.6
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 9.9e-70 267.3 286 54.9
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 9.9e-70 267.3 286 54.9
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 7.9e-67 257.7 277 54.9
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 7.9e-67 257.7 277 54.9
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 2.8e-64 249.2 250 57.2
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.4e-63 246.9 243 58.0
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 4.0e-63 245.4 267 54.7
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 4.0e-63 245.4 267 54.7
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 4.0e-63 245.4 267 54.7
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 2.0e-62 243.0 243 57.2
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 1.7e-61 240.0 267 53.9
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 2.9e-61 239.2 259 52.9
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 2.9e-61 239.2 259 52.9
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 2.9e-61 239.2 259 52.9
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 2.9e-61 239.2 259 52.9
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 2.9e-61 239.2 259 52.9
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 2.9e-61 239.2 259 52.9
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 1.9e-60 236.5 251 54.2
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 5.4e-60 235.0 255 55.3
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 6.0e-59 231.5 241 55.2
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.0e-58 230.7 242 55.4
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.8e-58 229.9 233 57.1
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 3.9e-58 228.8 247 55.1
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 3.9e-58 228.8 247 55.1
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 3.9e-58 228.8 247 55.1
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 3.3e-57 225.7 247 54.7
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 3.3e-57 225.7 247 54.7
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 5.6e-57 224.9 241 55.2
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 2.1e-56 223.0 247 54.7
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 8.1e-56 221.1 247 54.3
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 1.8e-55 219.9 267 52.4
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.6e-54 216.1 178 65.7
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 1.0e-50 204.1 182 63.7
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 2.8e-48 196.1 172 61.0
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 8.2e-48 194.5 232 51.7
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 2.5e-44 183.0 156 64.7
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 3.5e-43 179.1 213 50.7
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 3.5e-43 179.1 213 50.7
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.5e-43 179.1 139 67.6
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 4.6e-43 178.7 153 64.7
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 6.1e-43 178.3 182 59.3
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 3.9e-42 175.6 149 63.8
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.1e-42 175.3 95 89.5
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 1.2e-38 164.1 157 59.2
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.1e-36 157.5 233 45.1
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.1e-36 157.5 94 78.7
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 6.1e-35 151.8 146 58.2
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 3.0e-34 149.4 154 55.8
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 5.1e-34 148.7 123 65.9
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 1.1e-33 147.5 83 84.3
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 2.0e-33 146.7 96 77.1
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-32 144.1 92 77.2
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.7e-32 143.7 146 58.2
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.3e-31 138.7 84 81.0
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 5.9e-30 135.2 86 76.7
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.2e-27 127.5 204 43.6
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.7e-26 121.7 70 81.4
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 3.3e-25 119.4 139 56.1
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 1.0e-21 107.8 75 68.0
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.3e-21 107.5 63 82.5
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.7e-21 107.1 59 84.7
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 3.8e-21 105.9 63 81.0
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 8.5e-21 104.8 63 81.0
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 2.5e-20 103.2 63 82.5
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 4.2e-20 102.4 63 81.0
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 4.2e-20 102.4 63 81.0
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 4.2e-20 102.4 63 81.0
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 4.2e-20 102.4 143 44.8
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 6.1e-19 98.6 63 77.8
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 1.1e-17 94.4 63 73.0
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-16 90.9 70 64.3
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 2.4e-15 86.7 63 69.8
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 5.3e-15 85.5 52 78.8
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.1e-12 77.8 51 74.5
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.5e-12 77.4 46 80.4
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-10 70.5 47 66.0
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 2.3e-10 70.1 46 73.9
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 2.0e-09 67.0 37 83.8
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 2.0e-09 67.0 53 58.5
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 9.8e-09 64.7 49 61.2
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 4.8e-08 62.4 32 87.5
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 4.8e-08 62.4 32 87.5
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 4.8e-08 62.4 32 87.5
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.8e-08 62.4 115 39.1
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 6.3e-08 62.0 49 63.3
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 5.4e-07 58.9 116 36.2
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-06 57.4 64 54.7
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 2.7e-06 56.6 39 71.8


User provided reference genes

Program Settings