Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000172g0090 Nicotiana tabacum HOM05D003666 ORTHO05D004770 5.4e-223 777.3 388 100.0
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 3.9e-88 329.3 385 54.3
Solyc00g500187.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 6.3e-70 268.9 159 87.4
Solyc00g500251.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 6.3e-70 268.9 159 87.4
Aa31csc553G50 Aethionema arabicum HOM05D003666 ORTHO05D004770 5.9e-68 262.3 189 76.2
Nitab4.5_0006085g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.3e-64 250.4 155 82.6
Solyc00g013180.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.1e-63 248.1 139 92.8
Lj2A1228G69 Lonicera japonica HOM05D003666 ORTHO05D004770 2.2e-62 243.8 150 86.0
Sopen11g018270 Solanum pennellii HOM05D003666 ORTHO05D004770 5.3e-61 239.2 132 93.2
RcHm_v2.0_MTg0498651 Rosa chinensis HOM05D003666 ORTHO05D004770 4.5e-60 236.1 139 89.2
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 5.9e-60 235.7 136 90.4
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 5.9e-60 235.7 139 88.5
unitig_87.g28023 Utricularia gibba HOM05D003666 ORTHO05D004770 5.9e-60 235.7 181 71.8
CAN.G65.28 Capsicum annuum HOM05D003666 ORTHO05D004770 1.7e-59 234.2 132 91.7
Potri.007G061921 Populus trichocarpa HOM05D003666 ORTHO05D004770 2.9e-59 233.4 152 81.6
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 5.0e-59 232.6 136 89.0
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 1.4e-58 231.1 139 87.1
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 1.4e-58 231.1 139 87.1
AUR62042334 Chenopodium quinoa HOM05D003666 ORTHO05D004770 1.4e-58 231.1 139 87.1
AL3G44310 Arabidopsis lyrata HOM05D003666 ORTHO05D004770 4.2e-58 229.6 132 89.4
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 4.2e-58 229.6 136 88.2
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 1.2e-57 228.0 136 87.5
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 1.6e-57 227.6 200 64.0
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 2.1e-57 227.3 200 64.5
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 2.1e-57 227.3 200 64.5
arahy.Tifrunner.gnm1.ann1.DQZY30 Arachis hypogaea HOM05D003666 ORTHO05D004770 3.6e-57 226.5 139 86.3
arahy.Tifrunner.gnm1.ann1.G61VPX Arachis hypogaea HOM05D003666 ORTHO05D004770 3.6e-57 226.5 139 86.3
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 3.6e-57 226.5 134 88.1
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 3.6e-57 226.5 134 88.1
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 6.1e-57 225.7 136 86.0
Medtr0082s0060 Medicago truncatula HOM05D003666 ORTHO05D004770 1.0e-56 224.9 271 53.1
Lalb_Chr00c24g0407361 Lupinus albus HOM05D003666 ORTHO05D004770 3.9e-56 223.0 132 87.9
Lalb_Chr01g0010981 Lupinus albus HOM05D003666 ORTHO05D004770 3.9e-56 223.0 132 87.9
Nn1g09940 Nelumbo nucifera HOM05D003666 ORTHO05D004770 6.7e-56 222.2 132 87.9
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 3.3e-55 219.9 136 84.6
Nn1g10170 Nelumbo nucifera HOM05D003666 ORTHO05D004770 3.7e-54 216.5 129 87.6
Lalb_Chr06g0172221 Lupinus albus HOM05D003666 ORTHO05D004770 2.2e-51 207.2 132 83.3
Gohir.D09G016300 Gossypium hirsutum HOM05D003666 ORTHO05D004770 8.5e-51 205.3 127 84.3
Lalb_Chr06g0172341 Lupinus albus HOM05D003666 ORTHO05D004770 1.9e-50 204.1 131 82.4
Psat4g185400 Pisum sativum HOM05D003666 ORTHO05D004770 2.3e-48 197.2 132 78.0
SEGI_24024 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 5.2e-48 196.1 159 68.6
SEGI_34311 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 5.2e-48 196.1 159 68.6
Nitab4.5_0001788g0230 Nicotiana tabacum HOM05D003666 ORTHO05D004770 4.8e-46 189.5 162 69.1
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 2.0e-44 184.1 121 79.3
Gohir.A12G076865 Gossypium hirsutum HOM05D003666 ORTHO05D004770 3.5e-44 183.3 109 87.2
Hma1.2p1_0257F.1_g103600 Hydrangea macrophylla HOM05D003666 ORTHO05D004770 3.2e-42 176.8 102 91.2
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 5.5e-42 176.0 110 84.5
Thhalv10015949m.g Eutrema salsugineum HOM05D003666 ORTHO05D004770 1.4e-40 171.4 158 63.9
Peaxi162Scf01767g00002 Petunia axillaris HOM05D003666 ORTHO05D004770 4.0e-40 169.9 94 94.7
Peaxi162Scf00530g00005 Petunia axillaris HOM05D003666 ORTHO05D004770 2.6e-31 140.6 76 94.7
TPR.G18511 Trifolium pratense HOM05D003666 ORTHO05D004770 3.4e-31 140.2 96 78.1
CAN.G1.7 Capsicum annuum HOM05D003666 ORTHO05D004770 7.5e-31 139.0 81 86.4
SHI21047 Sapria himalayana HOM05D003666 ORTHO05D004770 1.4e-29 134.8 92 79.3
CAN.G85.17 Capsicum annuum HOM05D003666 ORTHO05D004770 3.1e-29 133.7 81 86.4
CAN.G1001.36 Capsicum annuum HOM05D003666 ORTHO05D004770 5.4e-29 132.9 81 85.2
arahy.Tifrunner.gnm1.ann1.A5I0RB Arachis hypogaea HOM05D003666 ORTHO05D004770 9.1e-29 132.1 96 76.0
SHI36045 Sapria himalayana HOM05D003666 ORTHO05D004770 2.0e-28 131.0 143 51.7
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 4.2e-26 123.2 160 51.9
CSS0015485 Camellia sinensis var. sinensis HOM05D003666 ORTHO05D004770 7.2e-26 122.5 132 56.1
Nitab4.5_0001788g0330 Nicotiana tabacum HOM05D003666 ORTHO05D013494 1.4e-24 118.2 87 70.1
Nitab4.5_0000172g1330 Nicotiana tabacum HOM05D003666 ORTHO05D016272 2.0e-23 114.4 88 70.5
Peaxi162Scf00147g00311 Petunia axillaris HOM05D003666 ORTHO05D004770 2.6e-23 114.0 83 74.7
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 3.4e-23 113.6 144 45.1
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 6.3e-22 109.4 112 57.1
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 8.3e-22 109.0 71 80.3
Nitab4.5_0010687g0070 Nicotiana tabacum HOM05D003666 ORTHO05D013494 8.3e-22 109.0 82 70.7
Haze_27149 Corylus avellana HOM05D003666 ORTHO05D004770 8.0e-17 92.4 137 38.0
Solyc10g045765.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.4e-15 86.7 87 56.3
SMO053G0008 Selaginella moellendorffii HOM05D003666 ORTHO05D004770 5.8e-15 86.3 140 44.3
Oeu022812.1 Olea europaea HOM05D003666 ORTHO05D004770 4.9e-14 83.2 71 69.0
Lalb_Chr00c54g0413571 Lupinus albus HOM05D003666 ORTHO05D004770 1.4e-13 81.6 48 83.3
MELO3C030345.2 Cucumis melo HOM05D003666 ORTHO05D004770 2.4e-13 80.9 55 81.8
Nitab4.5_0001152g1070 Nicotiana tabacum HOM05D011521 ORTHO05D013494 5.4e-13 79.7 80 52.5
Solyc10g062000.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.7e-11 74.7 50 74.0
Nitab4.5_0000085g0130 Nicotiana tabacum HOM05D003666 ORTHO05D004770 8.6e-11 72.4 77 51.9
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 1.5e-10 71.6 114 38.6
QL01p001433 Quercus lobata HOM05D009834 ORTHO05D012892 1.6e-09 68.2 83 48.2
arahy.Tifrunner.gnm1.ann1.P7MYAW Arachis hypogaea HOM05D003666 ORTHO05D004770 1.8e-08 64.7 49 65.3
PGSC0003DMG401019826 Solanum tuberosum HOM05D000555 ORTHO05D000646 3.1e-08 63.9 32 84.4
SEGI_03857 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 6.8e-08 62.8 57 63.2
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 3.4e-07 60.5 73 46.6
SHI01159 Sapria himalayana HOM05D003666 ORTHO05D004770 5.8e-07 59.7 54 57.4
Nitab4.5_0001649g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.7e-06 58.2 32 84.4
SHI15673 Sapria himalayana HOM05D003666 ORTHO05D004770 3.7e-06 57.0 96 39.6


User provided reference genes

Program Settings