Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 4.0e-190 667.9 333 100.0
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.7e-180 634.8 334 95.8
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 6.0e-146 521.2 336 79.8
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.3e-140 503.4 356 76.1
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 3.0e-137 492.3 363 73.0
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 3.1e-134 482.3 385 68.6
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 3.1e-126 455.7 356 71.1
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.7e-103 379.0 354 57.3
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 3.7e-103 379.0 338 58.6
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 7.7e-101 371.3 369 54.5
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.7e-100 370.2 358 57.3
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 1.4e-99 367.1 362 57.7
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 5.5e-99 365.2 354 56.2
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 8.8e-97 357.8 355 54.9
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 2.6e-96 356.3 355 54.9
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 3.3e-96 355.9 356 55.3
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 2.8e-95 352.8 355 54.6
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 3.7e-95 352.4 359 53.8
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 8.2e-95 351.3 342 52.6
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 8.2e-95 351.3 342 52.6
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 7.0e-94 348.2 354 54.2
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 3.5e-93 345.9 340 54.7
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 3.5e-93 345.9 340 54.7
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.0e-92 344.4 358 53.4
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 2.2e-92 343.2 343 53.1
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 2.9e-92 342.8 391 49.6
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 6.5e-92 341.7 350 54.9
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.5e-91 340.5 355 53.8
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 2.5e-91 339.7 353 53.0
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 2.5e-91 339.7 340 54.1
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 9.4e-91 337.8 355 53.5
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.1e-90 336.7 355 53.5
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 4.7e-90 335.5 352 52.6
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 1.4e-89 334.0 370 50.3
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 1.8e-89 333.6 354 52.8
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 4.0e-89 332.4 382 49.0
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 4.0e-89 332.4 382 49.0
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 1.5e-88 330.5 354 52.5
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 2.0e-88 330.1 356 52.5
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 2.6e-88 329.7 391 49.4
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 3.4e-88 329.3 355 52.1
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 2.8e-87 326.2 359 50.7
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 2.8e-87 326.2 416 46.2
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 4.8e-87 325.5 355 52.7
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 6.3e-87 325.1 358 52.0
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 3.1e-86 322.8 361 52.4
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 3.1e-86 322.8 355 51.0
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 4.1e-86 322.4 362 48.9
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 1.6e-85 320.5 357 51.0
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 2.7e-85 319.7 359 49.6
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.7e-85 319.7 354 49.7
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 7.7e-85 318.2 372 48.7
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 4.2e-83 312.4 355 49.3
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 6.1e-82 308.5 357 48.5
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.8e-81 307.0 396 48.0
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 5.2e-81 305.4 344 50.3
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 3.4e-80 302.8 342 48.8
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 7.5e-80 301.6 358 46.9
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 1.3e-79 300.8 367 46.6
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 2.2e-79 300.1 382 46.3
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 3.7e-79 299.3 345 48.4
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 2.4e-78 296.6 365 47.1
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 5.4e-78 295.4 339 46.9
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 9.1e-78 294.7 339 48.1
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.6e-77 293.9 361 46.8
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 7.7e-77 291.6 354 46.9
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.3e-76 290.8 354 45.5
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 2.9e-76 289.7 358 46.6
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 8.6e-76 288.1 359 46.5
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 8.6e-76 288.1 376 44.9
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.1e-75 287.7 357 47.1
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.5e-75 286.6 354 45.2
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 2.5e-75 286.6 344 46.5
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 3.3e-75 286.2 354 46.0
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 3.3e-75 286.2 354 46.6
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.2e-74 284.3 353 45.9
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 2.8e-74 283.1 357 44.0
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 2.8e-74 283.1 359 46.2
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.8e-74 283.1 374 43.9
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 3.6e-74 282.7 341 45.7
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 8.0e-74 281.6 353 44.8
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 1.8e-73 280.4 361 45.4
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 1.8e-73 280.4 354 44.4
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 3.0e-73 279.6 358 44.7
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 4.0e-73 279.3 354 44.4
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 5.2e-73 278.9 363 44.1
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 2.0e-72 276.9 365 43.3
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 3.4e-72 276.2 358 44.7
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 3.4e-72 276.2 358 45.0
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 5.7e-72 275.4 354 44.1
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 5.7e-72 275.4 336 50.6
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 5.7e-72 275.4 355 44.8
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 7.5e-72 275.0 358 44.1
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.4e-70 270.8 355 45.1
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 5.4e-70 268.9 363 42.7
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 7.0e-70 268.5 363 42.4
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 9.2e-70 268.1 320 50.6
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 4.5e-69 265.8 412 41.7
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 3.9e-68 262.7 339 44.2
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 3.9e-68 262.7 339 44.2
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.5e-67 260.8 251 56.6
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 6.1e-66 255.4 339 45.1
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 2.9e-63 246.5 345 41.7
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 1.4e-62 244.2 351 41.0
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 1.4e-62 244.2 396 40.2
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.4e-62 243.4 252 56.7
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 3.5e-61 239.6 352 41.2
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 9.5e-59 231.5 351 37.6
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 6.2e-58 228.8 355 37.2
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 1.1e-57 228.0 252 51.2
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 2.3e-57 226.9 348 40.2
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 1.2e-56 224.6 328 40.9
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 2.9e-55 219.9 186 62.4
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.9e-54 217.2 251 51.4
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 2.1e-53 213.8 388 36.6
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 2.7e-53 213.4 355 36.3
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 1.0e-52 211.5 184 60.9
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 3.9e-52 209.5 251 51.4
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 1.6e-50 204.1 233 49.8
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.6e-50 204.1 251 46.2
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 3.7e-47 193.0 218 49.5
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.2e-46 189.9 184 56.5
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 9.2e-46 188.3 251 42.2
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 2.7e-45 186.8 326 37.1
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.5e-45 186.4 184 56.0
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.9e-44 183.0 184 54.9
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.9e-43 180.6 184 54.9
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.9e-43 180.6 184 54.9
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.9e-43 180.6 184 54.9
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 2.1e-42 177.2 207 46.4
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.8e-41 174.1 184 52.2
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 3.1e-41 173.3 251 43.4
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.3e-36 157.9 166 52.4
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 2.8e-34 150.2 223 43.9
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 4.4e-32 142.9 185 46.5
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.1e-29 134.0 186 44.1
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 3.9e-28 129.8 224 38.4
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 1.1e-27 128.3 89 67.4
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.5e-27 127.9 195 41.0
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 7.3e-27 125.6 89 65.2
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.3e-26 124.8 89 62.9
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.4e-25 121.3 109 56.0
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 4.0e-25 119.8 97 55.7
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 6.9e-25 119.0 166 39.2
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.9e-22 110.9 90 55.6
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 2.4e-22 110.5 69 73.9
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 2.5e-19 100.5 449 23.4
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 1.4e-17 94.7 84 53.6
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 1.5e-16 91.3 66 62.1
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.0e-16 90.9 81 53.1
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 4.9e-15 86.3 152 38.8
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 2.1e-10 70.9 45 68.9
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.8e-10 69.7 45 73.3
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 5.8e-08 62.8 35 74.3
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 7.6e-08 62.4 39 66.7
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.0e-07 62.0 133 39.1
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-07 61.2 33 75.8
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-06 58.5 32 75.0
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-06 58.2 28 78.6
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 3.2e-06 57.0 138 36.2


User provided reference genes

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