Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.1e-171 605.5 294 100.0
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.1e-150 534.3 287 92.3
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.7e-139 499.6 278 87.8
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 2.8e-139 498.8 278 87.8
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.1e-130 468.4 285 79.6
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 1.7e-128 463.0 282 79.1
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 2.3e-125 452.6 285 75.8
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.5e-124 449.9 277 78.0
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.4e-122 443.4 278 76.6
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 4.1e-122 441.8 279 76.7
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.2e-121 440.3 282 75.5
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.2e-121 440.3 284 75.0
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 2.0e-121 439.5 276 78.6
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.0e-121 439.5 279 78.1
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 7.7e-121 437.6 251 85.3
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 6.5e-120 434.5 306 69.9
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 8.5e-120 434.1 285 73.7
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.9e-119 433.0 280 73.6
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 2.5e-119 432.6 284 72.5
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 2.5e-119 432.6 279 77.8
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 2.5e-119 432.6 275 74.9
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 2.5e-119 432.6 274 77.4
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 4.2e-119 431.8 277 75.1
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 5.5e-119 431.4 276 73.6
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 2.1e-118 429.5 279 72.0
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 6.1e-118 427.9 282 73.0
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.0e-117 427.2 282 72.0
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.3e-117 426.0 279 72.0
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.3e-117 426.0 281 73.0
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 5.2e-117 424.9 281 73.0
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 8.8e-117 424.1 274 74.8
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.2e-116 423.7 288 71.5
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.5e-116 423.3 281 73.3
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.0e-116 422.9 282 71.6
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 4.4e-116 421.8 273 73.3
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 4.4e-116 421.8 273 73.3
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 5.7e-116 421.4 277 73.6
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 7.5e-116 421.0 279 71.7
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.7e-115 419.9 281 72.6
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.7e-115 419.9 279 72.0
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 2.2e-115 419.5 281 71.2
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.2e-115 419.5 281 71.2
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.2e-115 419.5 320 65.6
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.8e-115 419.1 279 71.3
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 6.3e-115 417.9 278 72.3
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 6.3e-115 417.9 255 77.6
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 1.1e-114 417.2 279 70.6
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.4e-114 416.8 278 72.3
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 4.1e-114 415.2 277 71.8
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 5.4e-114 414.8 274 73.0
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 9.1e-114 414.1 279 71.0
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.6e-113 413.3 279 71.0
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 7.7e-113 411.0 278 70.5
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.7e-112 409.8 274 72.3
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.2e-112 409.5 295 68.8
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.2e-112 409.5 295 68.8
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 5.0e-112 408.3 274 72.3
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 5.0e-112 408.3 282 70.2
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.1e-111 407.1 278 70.9
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 1.5e-111 406.8 272 72.1
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 5.5e-111 404.8 279 68.8
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 6.1e-110 401.4 274 71.9
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.4e-109 400.2 277 69.7
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 3.0e-109 399.1 280 71.1
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 3.0e-109 399.1 337 62.0
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.2e-108 397.1 279 68.1
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.0e-108 396.4 281 69.8
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 3.4e-108 395.6 281 69.8
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 3.4e-108 395.6 274 71.2
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 3.4e-108 395.6 326 61.3
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 4.4e-108 395.2 286 68.5
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 4.4e-108 395.2 272 68.4
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 7.5e-108 394.4 274 70.1
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.3e-107 393.7 265 71.3
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.7e-107 393.3 280 69.6
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 1.7e-107 393.3 274 70.1
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 2.2e-107 392.9 280 69.6
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 2.2e-107 392.9 297 65.7
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 3.7e-107 392.1 274 69.3
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 3.7e-107 392.1 281 68.0
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 4.9e-107 391.7 266 70.7
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 6.3e-107 391.3 261 72.8
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 7.0e-106 387.9 281 68.7
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 9.2e-106 387.5 263 70.0
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 2.7e-105 386.0 281 68.0
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 3.5e-105 385.6 267 72.3
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 8.6e-104 380.9 260 68.8
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.5e-103 380.2 257 70.4
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 7.3e-103 377.9 272 68.0
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 9.5e-103 377.5 255 70.6
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 3.0e-101 372.5 277 67.1
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 4.0e-101 372.1 275 67.3
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 4.9e-99 365.2 272 64.3
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 7.0e-98 361.3 214 79.4
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 7.8e-97 357.8 277 63.9
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.1e-95 354.0 210 76.2
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 5.6e-95 351.7 307 59.3
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.6e-94 350.1 260 67.7
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.1e-94 349.7 285 64.2
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 8.9e-93 344.4 230 71.7
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 3.2e-90 335.9 300 58.0
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.6e-89 333.6 283 58.0
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 4.6e-89 332.0 252 64.3
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 2.8e-86 322.8 285 61.4
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.1e-85 320.9 264 61.0
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 2.3e-85 319.7 278 58.6
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 6.8e-85 318.2 264 60.2
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.6e-84 316.2 277 59.2
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.1e-82 310.8 275 57.8
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 7.1e-82 308.1 276 59.8
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.0e-80 304.3 272 61.8
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.3e-80 303.9 272 61.4
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 3.9e-80 302.4 283 55.1
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-79 300.8 272 60.7
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 5.6e-79 298.5 279 54.5
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.6e-78 297.0 274 60.2
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 3.6e-78 295.8 292 57.5
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.4e-77 293.9 207 69.1
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 1.5e-76 290.4 254 57.9
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.7e-75 287.0 291 56.7
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.1e-73 280.0 212 63.7
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 7.8e-73 278.1 346 48.6
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.8e-69 266.9 207 64.3
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 9.3e-66 254.6 264 51.1
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 4.8e-62 242.3 262 48.5
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 5.8e-60 235.3 156 76.3
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.5e-57 226.1 291 44.0
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 4.6e-57 225.7 260 47.3
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.8e-56 223.8 238 52.1
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 7.4e-55 218.4 149 72.5
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.6e-54 217.2 135 74.8
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.2e-52 211.1 268 44.4
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 6.0e-49 198.7 160 59.4
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 1.3e-48 197.6 113 82.3
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 3.0e-48 196.4 209 45.5
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 6.7e-48 195.3 256 40.2
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.0e-40 171.4 289 36.0
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.3e-40 171.0 265 42.3
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.5e-39 167.5 224 42.0
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 3.3e-39 166.4 214 43.9
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.1e-34 151.4 193 45.6
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 2.1e-33 147.1 88 77.3
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 9.7e-31 138.3 258 33.3
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 1.6e-30 137.5 255 34.1
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 7.2e-26 122.1 242 33.5
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.6e-25 120.9 214 34.6
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.3e-24 117.1 378 26.7
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 3.0e-24 116.7 72 77.8
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 3.0e-24 116.7 72 77.8
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 6.7e-24 115.5 72 76.4
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 4.8e-22 109.4 317 30.6
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 1.1e-21 108.2 105 42.9
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 9.1e-21 105.1 113 41.6
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.5e-20 102.8 157 40.8
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 5.9e-20 102.4 89 60.7
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 7.7e-20 102.1 212 34.4
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.0e-19 101.7 156 38.5
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.6e-17 94.4 252 29.0
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 2.3e-16 90.5 60 71.7
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 3.9e-16 89.7 324 25.6
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 8.5e-11 72.0 79 50.6


User provided reference genes

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