Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.6e-103 379.4 185 100.0
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.0e-94 350.1 189 91.0
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 1.9e-72 276.2 189 73.0
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 2.1e-71 272.7 191 71.7
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 3.0e-70 268.9 189 71.4
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 5.1e-70 268.1 187 73.8
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 5.8e-66 254.6 185 68.6
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 2.2e-65 252.7 185 66.5
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 6.4e-65 251.1 187 68.4
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 8.4e-65 250.8 190 65.8
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 8.4e-65 250.8 187 66.8
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 1.4e-64 250.0 187 66.3
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 2.4e-64 249.2 184 66.3
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 3.2e-64 248.8 185 67.6
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 4.6e-63 245.0 189 65.1
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 6.0e-63 244.6 185 65.4
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 1.0e-62 243.8 185 65.4
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 3.9e-62 241.9 184 65.2
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 5.1e-62 241.5 185 61.6
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 6.7e-62 241.1 188 63.8
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 8.7e-62 240.7 187 65.2
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 8.7e-62 240.7 203 63.1
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.1e-61 240.4 186 66.1
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 1.1e-61 240.4 185 63.2
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.1e-61 240.4 186 62.9
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.5e-61 240.0 186 65.6
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.9e-61 239.6 185 62.2
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 1.9e-61 239.6 181 65.2
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 2.5e-61 239.2 122 87.7
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 3.3e-61 238.8 186 67.2
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 4.3e-61 238.4 187 64.2
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 9.6e-61 237.3 188 63.3
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 9.6e-61 237.3 186 64.0
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 1.3e-60 236.9 187 61.5
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.3e-60 236.9 189 65.1
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.3e-60 236.9 192 63.5
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 2.8e-60 235.7 187 61.0
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 2.8e-60 235.7 185 61.6
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 6.2e-60 234.6 184 65.8
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 8.1e-60 234.2 185 62.2
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 1.1e-59 233.8 185 61.6
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.4e-59 233.4 205 58.5
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 1.4e-59 233.4 185 67.0
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.8e-59 233.0 185 61.1
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 3.1e-59 232.3 187 64.7
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 3.1e-59 232.3 185 62.2
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 4.0e-59 231.9 192 60.4
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 4.0e-59 231.9 188 63.3
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 6.9e-59 231.1 183 65.0
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 1.2e-58 230.3 202 60.4
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 2.6e-58 229.2 186 63.4
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 3.4e-58 228.8 187 64.2
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 5.8e-58 228.0 187 61.5
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 2.2e-57 226.1 255 50.6
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 4.9e-57 224.9 187 60.4
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 6.5e-57 224.6 188 60.6
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 6.5e-57 224.6 185 61.1
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.1e-56 223.8 188 59.6
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 3.2e-56 222.2 186 60.8
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 4.2e-56 221.9 186 58.1
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 4.2e-56 221.9 185 59.5
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 5.5e-56 221.5 192 63.0
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 7.1e-56 221.1 115 84.3
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 9.3e-56 220.7 197 57.9
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 1.2e-55 220.3 187 59.4
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.6e-55 219.9 188 63.3
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 1.6e-55 219.9 188 63.3
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 2.1e-55 219.5 216 56.9
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.5e-55 218.8 181 62.4
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 4.6e-55 218.4 115 85.2
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 6.0e-55 218.0 122 78.7
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 7.9e-55 217.6 216 56.5
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 1.3e-54 216.9 249 50.6
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 2.3e-54 216.1 184 58.2
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 1.1e-53 213.8 112 83.0
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 5.7e-53 211.5 185 58.9
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 7.4e-53 211.1 184 54.9
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 9.6e-53 210.7 189 58.2
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 2.1e-52 209.5 187 58.3
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 2.8e-52 209.1 177 61.0
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 6.3e-52 208.0 188 58.5
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.1e-51 207.2 121 77.7
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 1.4e-51 206.8 188 58.0
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.8e-51 206.5 185 58.9
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 3.1e-51 205.7 109 82.6
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 2.0e-50 203.0 153 62.7
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.7e-49 199.9 186 55.9
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 3.8e-49 198.7 186 53.8
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 6.5e-49 198.0 170 57.6
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 6.5e-49 198.0 194 55.7
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 1.1e-48 197.2 196 54.1
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.1e-48 197.2 186 53.2
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.4e-48 196.8 109 78.0
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 7.2e-48 194.5 161 60.2
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.6e-47 193.4 110 75.5
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 6.1e-47 191.4 108 75.9
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 7.9e-47 191.0 186 57.0
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.0e-46 190.7 106 76.4
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 1.8e-43 179.9 140 61.4
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 1.2e-42 177.2 131 64.9
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 7.7e-42 174.5 168 56.0
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 2.2e-41 172.9 241 44.4
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 8.5e-41 171.0 180 53.3
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 5.5e-40 168.3 166 53.6
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.6e-39 166.8 116 59.5
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 4.6e-39 165.2 86 84.9
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 1.4e-38 163.7 110 59.1
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 2.3e-38 162.9 127 63.0
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 2.2e-36 156.4 107 59.8
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 4.8e-36 155.2 135 60.0
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.2e-34 150.6 185 45.4
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 1.4e-30 137.1 160 49.4
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.9e-30 135.6 102 53.9
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 6.7e-30 134.8 202 41.6
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 2.6e-29 132.9 132 55.3
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.7e-28 130.2 143 51.7
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 5.3e-27 125.2 138 54.3
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 1.6e-26 123.6 95 51.6
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 2.0e-26 123.2 63 85.7
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 5.0e-25 118.6 108 47.2
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 1.5e-24 117.1 100 44.0
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 4.2e-24 115.5 96 52.1
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 4.7e-23 112.1 255 33.3
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 8.0e-23 111.3 95 47.4
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 9.7e-21 104.4 85 58.8
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 1.1e-19 100.9 114 55.3
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 7.0e-19 98.2 114 51.8
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 2.0e-18 96.7 50 80.0
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 2.7e-18 96.3 104 44.2
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 7.7e-18 94.7 99 38.4
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 7.7e-18 94.7 51 78.4
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 5.2e-14 82.0 74 50.0
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 1.2e-13 80.9 116 44.0
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 3.1e-11 72.8 114 42.1
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 7.0e-11 71.6 113 35.4
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 1.2e-10 70.9 50 58.0
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 8.0e-07 58.2 109 36.7
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 8.0e-07 58.2 98 39.8
BolC6t35595H Brassica oleracea HOM05D040450 ORTHO05D033487 6.8e-06 55.1 26 84.6


User provided reference genes

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