Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.6e-144 516.2 278 100.0
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.1e-105 387.1 290 76.6
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.6e-104 383.3 288 77.1
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 4.4e-102 375.2 290 74.5
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.7e-98 363.2 220 92.7
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 6.2e-88 328.2 278 66.5
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.2e-75 287.3 279 56.6
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.3e-72 277.3 295 53.9
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.8e-72 276.2 274 56.2
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.0e-70 270.0 300 53.3
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 2.0e-70 270.0 300 51.7
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.1e-68 264.2 239 56.5
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.4e-68 263.8 296 50.0
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 7.2e-68 261.5 243 56.8
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.6e-67 260.4 300 50.0
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.6e-67 258.8 242 55.8
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 6.1e-67 258.5 301 49.8
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.4e-66 257.3 242 55.4
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.8e-66 256.9 220 61.4
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.9e-66 255.8 242 55.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 8.8e-66 254.6 303 51.5
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.1e-65 254.2 300 49.0
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.3e-64 250.8 298 48.7
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.2e-64 250.0 298 48.3
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 2.4e-63 246.5 296 49.3
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.3e-63 245.4 298 48.0
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 7.7e-62 241.5 355 44.8
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.0e-61 241.1 258 50.4
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.3e-61 240.7 239 54.0
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 3.8e-61 239.2 336 43.5
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 5.5e-60 235.3 216 59.3
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.2e-59 234.2 217 58.5
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 2.7e-59 233.0 296 48.3
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 2.7e-59 233.0 296 48.3
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.7e-59 233.0 217 55.3
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.7e-59 233.0 217 55.3
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 7.9e-59 231.5 303 46.9
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.4e-58 230.7 404 39.4
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 2.3e-58 229.9 274 48.2
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 5.1e-58 228.8 279 46.6
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.5e-57 227.3 239 50.2
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.0e-57 226.9 241 51.5
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 1.3e-56 224.2 306 44.4
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.7e-56 223.8 416 38.0
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 2.8e-56 223.0 301 48.2
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.8e-55 220.3 248 52.8
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 9.1e-55 218.0 240 49.6
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 9.1e-55 218.0 251 49.0
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 2.6e-54 216.5 239 51.0
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 5.9e-54 215.3 254 48.0
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.3e-53 214.2 254 48.0
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 1.9e-52 210.3 300 43.7
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.9e-52 210.3 240 49.6
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 2.5e-52 209.9 322 42.5
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 5.5e-52 208.8 255 47.5
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.6e-51 207.2 243 49.4
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 2.1e-51 206.8 306 42.5
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 6.1e-51 205.3 287 44.3
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.1e-51 205.3 242 47.1
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.0e-50 204.5 305 42.0
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 3.0e-50 203.0 287 43.6
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 4.4e-49 199.1 294 42.9
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 7.4e-49 198.4 266 45.5
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 9.7e-49 198.0 257 44.0
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 6.3e-48 195.3 256 46.5
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 8.2e-48 194.9 296 41.6
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.1e-47 194.5 306 41.5
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 2.6e-46 189.9 292 44.9
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 2.6e-46 189.9 263 44.1
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 5.9e-46 188.7 234 45.7
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.0e-45 188.0 247 56.3
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.7e-45 187.2 241 45.2
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 5.0e-45 185.7 308 41.9
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.5e-44 184.1 238 45.4
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 9.4e-44 181.4 283 41.7
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.6e-43 180.6 279 40.5
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 6.1e-43 178.7 279 40.5
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 6.1e-43 178.7 279 40.5
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.0e-42 177.9 259 42.9
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.4e-42 177.6 279 40.1
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.5e-41 174.1 279 39.8
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 4.4e-41 172.6 300 37.0
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 5.7e-41 172.2 274 38.3
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.8e-40 169.9 273 38.5
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.1e-39 167.9 262 40.8
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.1e-39 167.9 273 38.1
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 5.3e-39 165.6 263 38.4
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 3.5e-38 162.9 262 40.5
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 5.9e-38 162.2 200 50.5
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 2.2e-37 160.2 216 44.0
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.9e-36 157.1 281 37.4
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 2.5e-36 156.8 261 38.7
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 2.5e-36 156.8 264 38.3
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 2.5e-36 156.8 299 37.8
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 3.2e-36 156.4 308 39.6
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.2e-36 156.0 226 41.6
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 7.2e-36 155.2 230 43.0
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 7.2e-36 155.2 179 48.6
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 2.1e-35 153.7 248 39.9
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 4.0e-34 149.4 309 42.7
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 8.8e-34 148.3 221 42.5
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.5e-33 147.5 282 36.2
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 2.6e-33 146.7 191 48.2
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 7.5e-33 145.2 267 36.3
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 4.8e-32 142.5 309 42.1
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 4.8e-32 142.5 239 38.9
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 8.3e-32 141.7 253 34.0
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 2.4e-31 140.2 270 35.6
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.1e-31 139.8 148 52.7
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 4.1e-31 139.4 288 37.2
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.2e-30 137.9 218 41.3
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.2e-30 137.9 176 46.0
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.7e-29 134.0 275 36.4
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 5.0e-29 132.5 234 44.0
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-28 131.3 179 44.7
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.9e-28 130.6 170 41.2
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 5.5e-28 129.0 235 38.7
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.3e-26 123.6 259 35.9
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 5.2e-26 122.5 296 33.8
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 5.7e-25 119.0 83 71.1
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 9.8e-25 118.2 238 36.6
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.7e-24 117.5 285 32.6
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 4.9e-24 115.9 238 35.7
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.4e-23 114.4 280 31.1
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 9.2e-23 111.7 219 35.2
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.6e-22 110.9 278 34.9
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.3e-21 107.1 262 30.9
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 8.6e-21 105.1 213 34.7
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.9e-20 104.0 226 33.6
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 4.3e-20 102.8 251 34.3
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.2e-19 101.3 134 41.0
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 3.6e-19 99.8 133 39.1
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 4.7e-19 99.4 281 29.5
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.0e-18 98.2 184 34.8
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.8e-18 97.4 83 60.2
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 5.2e-18 95.9 142 42.3
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 2.6e-17 93.6 228 32.0
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 1.7e-16 90.9 136 40.4
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 3.2e-15 86.7 217 33.6
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.5e-09 67.8 97 44.3
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 3.4e-09 66.6 69 49.3
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 2.2e-08 63.9 83 44.6
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 1.9e-07 60.8 51 58.8
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 7.8e-06 55.5 70 45.7


User provided reference genes

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