Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000154g0080 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.9e-259 898.7 452 100.0
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 8.8e-241 836.6 478 90.6
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.2e-237 826.2 482 87.8
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 2.6e-237 825.1 482 87.8
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 5.0e-236 820.8 482 87.1
Solyc02g089370.2 Solanum lycopersicum HOM05D003495 ORTHO05D004159 6.5e-236 820.5 482 87.1
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 2.1e-234 815.5 509 83.9
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 6.1e-234 813.9 482 86.7
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 2.3e-233 812.0 478 88.1
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 8.8e-233 810.1 482 85.7
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 5.7e-232 807.4 482 85.9
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 7.4e-232 807.0 482 85.9
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 1.8e-230 802.4 482 85.3
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 1.8e-230 802.4 482 85.3
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 4.1e-230 801.2 482 84.4
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 1.2e-229 799.7 482 84.6
SGA_v2.0_scaffold148G36460 Striga asiatica HOM05D003495 ORTHO05D004159 5.9e-229 797.3 483 84.9
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 5.5e-227 790.8 482 83.8
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 9.4e-227 790.0 482 84.0
Actinidia36276 Actinidia chinensis HOM05D003495 ORTHO05D004159 2.1e-226 788.9 482 83.2
Lsat_1_v5_gn_4_173941 Lactuca sativa HOM05D003495 ORTHO05D004159 4.7e-226 787.7 482 83.6
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 6.1e-226 787.3 482 83.8
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 4.0e-225 784.6 482 84.2
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 6.7e-225 783.9 482 83.6
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 9.7e-224 780.0 484 83.7
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 1.7e-223 779.2 482 82.4
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 4.8e-223 777.7 482 83.2
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 1.8e-222 775.8 482 82.6
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 7.0e-222 773.9 482 82.8
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 1.6e-221 772.7 482 82.2
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 2.0e-221 772.3 482 82.8
Ca_20758_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 3.5e-221 771.5 482 82.4
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 3.5e-221 771.5 482 82.2
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 5.9e-221 770.8 482 82.6
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 7.7e-221 770.4 482 82.8
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 2.9e-220 768.5 482 82.0
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 5.0e-220 767.7 482 81.7
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 5.0e-220 767.7 484 81.8
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 8.5e-220 766.9 482 82.2
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 1.1e-219 766.5 482 82.2
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 1.1e-219 766.5 482 82.2
Gohir.D02G161860 Gossypium hirsutum HOM05D003495 ORTHO05D004159 1.5e-219 766.1 482 82.0
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 1.9e-219 765.8 481 81.9
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 2.5e-219 765.4 482 81.7
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 2.5e-219 765.4 482 82.0
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 9.4e-219 763.5 483 82.0
Nn7g37976 Nelumbo nucifera HOM05D003495 ORTHO05D004159 1.2e-218 763.1 482 81.5
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 1.6e-218 762.7 482 81.7
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 2.1e-218 762.3 482 81.3
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 2.1e-218 762.3 482 81.5
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 2.1e-218 762.3 482 82.0
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 2.1e-218 762.3 453 85.7
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 2.1e-218 762.3 482 81.3
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 2.7e-218 761.9 482 81.5
arahy.Tifrunner.gnm1.ann1.BVET7T Arachis hypogaea HOM05D003495 ORTHO05D004159 4.7e-218 761.1 482 81.1
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 4.7e-218 761.1 482 80.9
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 4.7e-218 761.1 482 80.9
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 1.4e-217 759.6 482 82.2
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 4.0e-217 758.1 482 81.1
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 5.2e-217 757.7 482 81.7
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 6.8e-217 757.3 482 81.1
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 8.8e-217 756.9 482 80.9
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 8.8e-217 756.9 481 80.9
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 2.0e-216 755.7 509 77.2
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 2.0e-216 755.7 483 81.8
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 2.0e-216 755.7 509 78.0
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 3.4e-216 755.0 483 80.7
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 4.4e-216 754.6 484 81.0
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 4.8e-215 751.1 482 81.1
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 6.3e-215 750.7 482 80.7
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 6.3e-215 750.7 482 80.7
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 6.3e-215 750.7 482 80.7
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 9.1e-214 746.9 481 80.9
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 1.6e-213 746.1 482 78.4
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 2.7e-213 745.3 482 79.5
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 3.5e-213 745.0 482 78.0
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 4.5e-213 744.6 482 79.3
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 5.9e-213 744.2 482 79.5
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 7.7e-213 743.8 603 67.7
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 2.3e-212 742.3 482 79.0
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 6.5e-212 740.7 482 79.5
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 1.9e-211 739.2 482 78.4
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 4.2e-211 738.0 482 79.3
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 9.5e-211 736.9 482 78.6
VMungo0464G0617 Vigna mungo HOM05D003495 ORTHO05D004159 1.6e-210 736.1 516 75.6
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 2.8e-210 735.3 484 79.1
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 2.3e-209 732.3 496 76.6
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 4.4e-208 728.0 479 77.5
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 5.7e-208 727.6 548 71.5
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 6.3e-207 724.2 550 71.1
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 5.9e-205 717.6 478 81.0
HPP92_025566 Vanilla planifolia HOM05D003495 ORTHO05D004159 7.3e-203 710.7 482 76.6
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 9.5e-203 710.3 482 77.2
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 4.7e-202 708.0 486 77.6
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 8.0e-202 707.2 430 83.7
unitig_748.g7268 Utricularia gibba HOM05D003495 ORTHO05D004159 3.0e-201 705.3 464 78.7
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 1.8e-198 696.0 482 77.0
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 9.2e-198 693.7 484 73.3
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 3.5e-197 691.8 431 82.4
Os02g0830801 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 3.3e-195 685.3 482 73.0
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 1.2e-194 683.3 484 71.1
CSS0011723 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 8.9e-193 677.2 464 76.9
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 2.7e-189 665.6 478 70.7
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 1.7e-188 662.9 479 70.8
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 5.6e-187 657.9 352 91.8
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 3.4e-184 648.7 464 73.7
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 1.9e-179 632.9 532 63.9
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 7.3e-179 630.9 490 68.0
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 3.6e-178 628.6 351 88.6
Hma1.2p1_2186F.1_g316380 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 2.9e-175 619.0 484 70.9
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 1.0e-172 610.5 352 85.2
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 8.7e-172 607.4 352 84.7
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 4.4e-168 595.1 430 71.6
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 9.9e-168 594.0 395 77.2
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 4.6e-165 585.1 325 89.2
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 1.2e-157 560.5 527 59.0
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 1.5e-155 553.5 514 58.8
CiPaw.03G081200 Carya illinoinensis HOM05D003495 ORTHO05D004159 3.3e-155 552.4 363 78.5
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 3.7e-154 548.9 310 85.5
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 3.7e-154 548.9 310 85.5
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 2.4e-153 546.2 310 85.2
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 2.4e-153 546.2 310 85.2
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 2.4e-153 546.2 513 57.5
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 6.4e-151 538.1 400 70.2
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 9.3e-150 534.3 310 83.2
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 1.6e-149 533.5 310 83.5
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 1.7e-135 486.9 392 63.0
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 1.3e-130 470.7 482 57.3
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.0e-127 461.1 314 79.9
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 1.5e-102 377.5 428 46.3
COL.COLO4_24184 Corchorus olitorius HOM05D003495 ORTHO05D004159 3.3e-78 296.6 166 88.0
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 3.7e-74 283.1 151 91.4
SHI33618 Sapria himalayana HOM05D003495 ORTHO05D004159 1.6e-72 277.7 210 69.0
Hund20736 Selenicereus undatus HOM05D003495 ORTHO05D004159 1.5e-62 244.6 157 75.8
Lj4A126T67 Lonicera japonica HOM05D003495 ORTHO05D004159 1.2e-51 208.4 164 73.2
Hund20737 Selenicereus undatus HOM05D003495 ORTHO05D004159 2.2e-50 204.1 118 80.5
CAN.G497.67 Capsicum annuum HOM05D003495 ORTHO05D004159 9.3e-49 198.7 105 86.7
QL02p063603 Quercus lobata HOM05D003495 ORTHO05D004159 1.0e-39 168.7 87 98.9
Oeu032838.1 Olea europaea HOM05D003495 ORTHO05D004159 1.3e-39 168.3 87 97.7
vmacro05604 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 3.0e-39 167.2 87 96.6
Cre17.g703750 Chlamydomonas reinhardtii HOM05D003495 ORTHO05D004159 4.6e-32 143.3 314 31.5
COL.COLO4_24181 Corchorus olitorius HOM05D003495 ORTHO05D004159 1.1e-30 138.7 72 97.2
BraA02t05288Z Brassica rapa HOM05D003495 ORTHO05D004159 3.7e-29 133.7 71 94.4
PGSC0003DMG400019864 Solanum tuberosum HOM05D003495 ORTHO05D004159 4.8e-29 133.3 67 100.0
A03p07300 Brassica napus HOM05D003495 ORTHO05D004159 4.5e-27 126.7 71 87.3
BraA03t10053Z Brassica rapa HOM05D003495 ORTHO05D004159 4.5e-27 126.7 71 87.3
Psat1g055400 Pisum sativum HOM05D003495 ORTHO05D004159 4.5e-27 126.7 91 67.0
C03p08370 Brassica napus HOM05D003495 ORTHO05D004159 7.6e-27 125.9 71 87.3
BolC3t13344H Brassica oleracea HOM05D003495 ORTHO05D004159 7.6e-27 125.9 71 87.3
SHI33612 Sapria himalayana HOM05D003495 ORTHO05D004159 7.6e-27 125.9 88 77.3
CAN.G497.59 Capsicum annuum HOM05D003495 ORTHO05D004159 1.0e-26 125.6 69 91.3
Haze_14359 Corylus avellana HOM05D003495 ORTHO05D004159 1.6e-24 118.2 66 89.4
HanXRQChr17g0549821 Helianthus annuus HOM05D003495 ORTHO05D004159 2.1e-24 117.9 74 83.8
CAN.G497.66 Capsicum annuum HOM05D003495 ORTHO05D004159 2.5e-22 110.9 73 76.7
SEGI_02656 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 1.8e-20 104.8 56 89.3
arahy.Tifrunner.gnm1.ann1.7VHQ3C Arachis hypogaea HOM05D000394 ORTHO05D013471 9.7e-14 82.4 49 85.7
PGSC0003DMG400025596 Solanum tuberosum HOM05D000072 ORTHO05D002334 1.3e-13 82.0 40 95.0
MCO10G374 Micromonas commoda HOM05D003495 ORTHO05D004159 2.2e-10 71.2 228 29.4
Haze_14360 Corylus avellana HOM05D003495 ORTHO05D004159 4.7e-08 63.5 33 100.0
Prupe.3G143100 Prunus persica HOM05D000001 ORTHO05D000003 1.4e-07 62.0 35 82.9


User provided reference genes

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