Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.3e-246 857.4 1187 100.0
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.2e-140 505.4 901 85.5
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 3.8e-134 483.8 894 76.0
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 7.4e-130 469.5 932 81.3
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 1.4e-128 465.3 981 77.9
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 2.1e-124 451.4 773 93.5
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 7.7e-119 433.0 717 98.9
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 6.6e-78 297.0 835 77.5
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 6.6e-78 297.0 755 83.0
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 8.0e-76 290.0 269 59.9
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.8e-75 288.9 854 73.7
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 2.2e-73 282.0 265 60.0
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 2.0e-71 275.4 269 57.2
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 1.7e-70 272.3 265 60.4
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 3.0e-70 271.6 271 57.2
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 6.6e-70 270.4 857 70.8
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 8.6e-70 270.0 269 56.5
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 4.3e-69 267.7 272 55.5
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 1.1e-67 263.1 267 57.7
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 1.1e-67 263.1 263 57.8
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 3.1e-67 261.5 858 72.7
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.9e-67 260.0 266 56.0
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 8.9e-67 260.0 260 57.7
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 7.5e-66 256.9 268 55.2
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 3.7e-65 254.6 252 58.3
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 8.3e-65 253.4 267 54.7
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.4e-64 252.7 714 85.2
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 1.9e-64 252.3 214 59.8
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 5.4e-64 250.8 261 54.8
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 2.7e-63 248.4 259 55.2
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 1.0e-62 246.5 264 52.7
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 2.3e-62 245.4 264 52.3
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 8.6e-62 243.4 203 61.6
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.1e-61 243.0 741 81.1
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.1e-61 243.0 741 81.1
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 1.1e-61 243.0 267 51.7
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 1.1e-61 243.0 207 60.9
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.5e-61 242.7 218 57.3
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 1.5e-61 242.7 215 60.9
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.5e-61 241.9 207 60.4
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 5.6e-61 240.7 207 60.4
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.1e-60 238.8 216 57.4
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 2.1e-60 238.8 166 72.9
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 4.7e-60 237.7 270 50.4
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 6.2e-60 237.3 262 50.4
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 6.2e-60 237.3 266 51.5
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.4e-59 236.1 267 50.6
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.3e-59 235.3 178 68.0
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 2.3e-59 235.3 225 60.9
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 2.3e-59 235.3 266 49.2
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 3.1e-59 235.0 197 62.4
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 5.2e-59 234.2 252 52.4
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 8.9e-59 233.4 264 53.4
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 1.5e-58 232.6 855 72.2
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 2.0e-58 232.3 219 56.6
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 2.0e-58 232.3 260 51.9
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 2.0e-58 232.3 261 50.2
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 2.6e-58 231.9 217 55.8
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 2.6e-58 231.9 195 61.5
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 2.6e-58 231.9 263 50.6
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 4.4e-58 231.1 200 62.0
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.4e-58 231.1 198 60.1
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 2.2e-57 228.8 273 49.1
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 3.2e-56 224.9 200 58.0
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 5.4e-56 224.2 201 58.7
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 2.7e-55 221.9 218 54.1
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 4.6e-55 221.1 272 48.9
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 1.3e-54 219.5 203 59.6
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 1.7e-54 219.2 852 72.9
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.9e-54 218.0 210 59.0
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 7.3e-53 213.8 199 54.8
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 9.6e-53 213.4 201 55.2
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 1.6e-52 212.6 274 46.4
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 8.1e-52 210.3 252 49.6
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.8e-51 209.1 200 58.0
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 2.4e-51 208.8 221 51.1
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 3.1e-51 208.4 212 53.8
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 1.5e-50 206.1 216 51.9
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.4e-50 204.5 190 59.5
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 7.6e-50 203.8 264 47.0
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.2e-49 202.2 198 53.5
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.9e-49 201.1 205 55.6
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 2.4e-48 198.7 197 56.3
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 9.3e-48 196.8 170 54.1
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 4.3e-45 188.0 215 53.0
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.3e-44 186.4 120 79.2
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 5.3e-43 181.0 139 61.2
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 1.2e-42 179.9 176 52.3
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.4e-42 177.9 141 66.0
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 7.6e-42 177.2 239 44.8
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 7.6e-42 177.2 206 49.0
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.4e-40 172.9 179 52.0
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 3.2e-40 171.8 199 46.7
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.4e-40 171.0 130 58.5
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 1.3e-38 166.4 173 53.2
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-38 166.4 189 52.4
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 3.0e-38 165.2 170 54.1
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 3.0e-38 165.2 170 54.1
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 6.6e-38 164.1 107 76.6
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.5e-37 162.9 116 70.7
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 2.5e-37 162.2 167 52.7
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 2.1e-36 159.1 170 51.2
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 2.1e-36 159.1 165 52.1
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.2e-34 153.3 146 50.0
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.5e-34 152.9 157 52.9
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 1.7e-33 149.4 178 46.6
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 1.7e-33 149.4 166 47.6
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.4e-32 146.4 146 49.3
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.4e-32 146.4 147 46.9
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 1.9e-32 146.0 190 43.2
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.9e-32 146.0 219 40.6
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 5.4e-32 144.4 160 46.9
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 5.4e-32 144.4 138 49.3
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 7.1e-32 144.1 149 49.7
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 2.1e-31 142.5 173 44.5
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 2.7e-31 142.1 128 51.6
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 6.0e-31 141.0 134 49.3
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 1.8e-30 139.4 174 44.8
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 6.7e-30 137.5 144 46.5
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 8.7e-30 137.1 176 43.8
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 1.9e-29 136.0 143 48.3
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 2.1e-28 132.5 188 40.4
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 6.2e-28 131.0 147 44.2
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.2e-23 116.7 124 54.8
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 2.1e-23 115.9 174 39.1
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 3.9e-22 111.7 215 39.5
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 2.1e-20 105.9 129 42.6
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 2.2e-17 95.9 134 37.3
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 1.8e-11 76.3 99 43.4
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 5.3e-11 74.7 182 25.8
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 2.9e-09 68.9 163 28.8
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 3.8e-09 68.6 176 26.1
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 6.5e-09 67.8 176 26.1
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 8.5e-09 67.4 177 27.1
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 8.5e-09 67.4 163 25.8
Psat4g051440 Pisum sativum HOM05D002453 ORTHO05D002107 8.5e-09 67.4 163 26.4
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 8.5e-09 67.4 163 27.0
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 1.4e-08 66.6 45 75.6
TPR.G9250 Trifolium pratense HOM05D002453 ORTHO05D002107 1.4e-08 66.6 176 23.9
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 1.9e-08 66.2 176 25.6
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 4.2e-08 65.1 159 25.2
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 4.2e-08 65.1 176 26.7
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 4.2e-08 65.1 176 26.7
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 5.5e-08 64.7 158 27.2
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 5.5e-08 64.7 158 27.2
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 5.5e-08 64.7 163 27.6
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 5.5e-08 64.7 115 29.6
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 7.2e-08 64.3 176 26.1
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 7.2e-08 64.3 158 27.2
Phvul.008G197400 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 1.2e-07 63.5 176 24.4
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 1.2e-07 63.5 176 23.9
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 1.2e-07 63.5 158 25.9
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 1.6e-07 63.2 176 24.4
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 1.6e-07 63.2 176 24.4
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 2.1e-07 62.8 158 26.6
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 2.7e-07 62.4 163 25.2
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 3.6e-07 62.0 84 38.1
Ca_21825_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 3.6e-07 62.0 163 25.8
Aa31LG8G12930 Aethionema arabicum HOM05D003056 ORTHO05D003422 4.6e-07 61.6 115 27.8
VMungo0647G1609 Vigna mungo HOM05D002453 ORTHO05D002107 4.6e-07 61.6 176 23.9
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 6.1e-07 61.2 158 25.9
SHI14130 Sapria himalayana HOM05D002453 ORTHO05D002107 6.1e-07 61.2 154 27.3
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 1.4e-06 60.1 163 25.8
Ciclev10018977m.g Citrus clementina HOM05D002453 ORTHO05D002107 1.4e-06 60.1 159 25.8
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 1.4e-06 60.1 163 26.4
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 1.8e-06 59.7 163 25.2
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 1.8e-06 59.7 163 23.9
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 2.3e-06 59.3 170 24.1
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 2.3e-06 59.3 158 25.3
Eucgr.B00492 Eucalyptus grandis HOM05D002453 ORTHO05D002107 2.3e-06 59.3 176 24.4
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 2.3e-06 59.3 200 28.0
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 2.3e-06 59.3 117 29.1
CBR_g38540 Chara braunii HOM05D001779 ORTHO05D001753 3.0e-06 58.9 72 37.5
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 3.0e-06 58.9 176 23.9
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 3.0e-06 58.9 159 23.3
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 3.0e-06 58.9 159 23.3
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 3.9e-06 58.5 163 24.5
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 3.9e-06 58.5 155 25.8
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 3.9e-06 58.5 163 26.4
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 6.7e-06 57.8 156 25.0
Glyma.17G099400 Glycine max HOM05D002453 ORTHO05D002107 6.7e-06 57.8 163 23.9
Hma1.2p1_0169F.1_g074750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 6.7e-06 57.8 83 37.3
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 8.8e-06 57.4 84 35.7
Gohir.A12G177000 Gossypium hirsutum HOM05D002453 ORTHO05D002107 8.8e-06 57.4 163 24.5
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 8.8e-06 57.4 163 24.5


User provided reference genes

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