Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 6.1e-205 717.2 353 100.0
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 1.3e-170 603.2 367 81.5
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 3.1e-169 598.6 367 80.4
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 1.3e-167 593.2 367 79.8
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 5.0e-151 538.1 311 85.2
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 3.4e-147 525.4 367 74.1
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 2.3e-143 512.7 293 89.4
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 6.6e-135 484.6 309 77.3
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.9e-129 466.5 363 68.6
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 1.9e-129 466.5 374 66.0
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 4.1e-129 465.3 360 66.1
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 4.1e-129 465.3 360 66.4
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 9.2e-129 464.2 347 68.6
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.7e-128 462.6 361 66.8
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 3.5e-128 462.2 372 64.8
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 3.5e-128 462.2 368 65.5
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 4.6e-128 461.8 364 67.3
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 7.8e-128 461.1 328 70.1
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 7.8e-128 461.1 328 70.1
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 1.3e-127 460.3 353 68.6
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 3.9e-127 458.8 364 66.8
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 5.1e-127 458.4 366 65.0
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 6.6e-127 458.0 364 67.3
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 6.6e-127 458.0 371 65.2
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.1e-126 457.2 322 71.1
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 3.3e-126 455.7 371 63.9
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 3.3e-126 455.7 362 64.4
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.6e-125 453.4 361 65.1
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 8.1e-125 451.1 364 66.2
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 6.9e-124 448.0 316 69.9
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.5e-123 446.8 362 64.4
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 3.4e-123 445.7 323 69.3
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 4.4e-123 445.3 361 64.5
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 7.6e-123 444.5 317 69.1
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 2.2e-122 443.0 347 65.4
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 3.8e-122 442.2 371 62.5
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 8.4e-122 441.0 363 65.0
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 2.4e-121 439.5 364 66.2
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 2.4e-121 439.5 308 69.8
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 4.2e-121 438.7 356 62.9
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 5.4e-121 438.3 325 68.3
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 7.1e-121 438.0 374 62.3
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 2.1e-120 436.4 311 68.8
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 3.5e-120 435.6 338 66.0
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 3.5e-120 435.6 358 65.4
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 4.6e-120 435.3 305 71.8
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 7.8e-120 434.5 328 68.3
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 1.0e-119 434.1 359 64.3
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 1.3e-119 433.7 364 63.7
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 5.1e-119 431.8 361 64.0
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 8.7e-119 431.0 327 66.4
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 8.7e-119 431.0 384 60.7
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 1.9e-118 429.9 364 61.8
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 1.9e-118 429.9 360 63.3
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 4.3e-118 428.7 299 72.2
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 4.3e-118 428.7 365 62.7
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 5.6e-118 428.3 321 67.9
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 1.3e-117 427.2 310 69.7
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.6e-117 426.8 299 71.9
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 2.8e-117 426.0 308 69.2
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 8.1e-117 424.5 304 69.4
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.1e-116 424.1 328 65.5
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 1.1e-116 424.1 321 67.6
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 1.4e-116 423.7 310 68.7
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 1.8e-116 423.3 297 70.7
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.1e-116 422.5 373 61.7
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 4.0e-116 422.2 361 62.3
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 4.0e-116 422.2 309 66.7
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 9.0e-116 421.0 317 67.5
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 1.5e-115 420.2 320 66.9
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 3.4e-115 419.1 296 69.9
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 9.9e-115 417.5 358 61.7
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 1.7e-114 416.8 313 67.4
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 2.2e-114 416.4 372 59.4
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 2.9e-114 416.0 311 68.2
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 4.9e-114 415.2 303 68.3
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 6.4e-114 414.8 314 67.8
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 8.4e-114 414.5 313 68.4
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 1.1e-113 414.1 307 69.4
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 2.1e-112 409.8 326 65.0
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 2.7e-112 409.5 313 67.1
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 6.0e-112 408.3 311 67.5
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 6.0e-112 408.3 327 62.7
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 3.0e-111 406.0 336 63.7
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 3.9e-111 405.6 381 58.0
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 8.7e-111 404.4 311 67.5
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 1.1e-110 404.1 345 61.4
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 3.6e-109 399.1 311 66.6
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 6.9e-108 394.8 305 63.9
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 1.5e-107 393.7 311 66.6
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 4.5e-107 392.1 279 70.3
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 9.3e-105 384.4 311 65.6
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 1.1e-102 377.5 322 63.0
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 5.3e-100 368.6 307 62.5
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 6.9e-100 368.2 378 54.2
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 2.0e-99 366.7 226 77.4
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 2.6e-99 366.3 381 53.8
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 7.6e-99 364.8 310 61.6
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 1.1e-97 360.9 361 54.6
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 2.7e-96 356.3 295 64.4
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 1.0e-95 354.4 309 59.2
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.1e-92 344.4 267 62.9
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 2.6e-91 339.7 318 57.2
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 3.4e-91 339.3 271 61.3
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.4e-89 334.0 277 61.0
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 3.0e-87 326.2 269 62.8
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 9.7e-86 321.2 292 58.6
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 1.4e-84 317.4 231 66.7
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 5.0e-82 308.9 274 59.1
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 6.1e-80 302.0 230 68.7
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 3.3e-78 296.2 349 51.6
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 5.0e-74 282.3 246 59.3
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.3e-70 269.6 245 62.0
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 6.3e-69 265.4 283 54.8
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.1e-68 264.6 298 51.7
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 2.1e-64 250.4 183 68.3
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 5.3e-60 235.7 216 55.6
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 9.1e-60 235.0 282 45.7
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 3.4e-54 216.5 200 54.5
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 3.7e-53 213.0 199 53.3
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 2.4e-52 210.3 220 50.9
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.0e-51 207.2 190 54.2
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.0e-50 204.9 200 52.0
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 7.2e-49 198.7 113 82.3
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 2.1e-48 197.2 195 52.3
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 2.8e-48 196.8 285 44.2
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 9.8e-46 188.3 336 39.9
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 4.5e-43 179.5 194 50.5
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 4.3e-41 172.9 220 50.5
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.9e-37 160.2 196 49.0
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 8.3e-37 158.7 105 68.6
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.7e-34 151.0 100 68.0
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 2.2e-29 134.0 68 88.2
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.1e-28 131.7 141 48.9
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 7.0e-28 129.0 105 61.9
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 1.4e-23 114.8 115 56.5
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 1.3e-18 98.2 101 55.4
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 1.1e-17 95.1 94 57.4
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 7.3e-17 92.4 96 54.2
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 5.8e-14 82.8 56 66.1
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 2.2e-13 80.9 50 72.0
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 3.8e-13 80.1 37 91.9
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 2.4e-12 77.4 54 64.8
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 3.6e-08 63.5 71 50.7
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 2.0e-06 57.8 53 56.6


User provided reference genes

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