Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000142g0350 Nicotiana tabacum HOM05D016759 ORTHO05D000169 7.2e-71 271.2 222 100.0
Nitab4.5_0001072g0020 Nicotiana tabacum HOM05D016759 ORTHO05D000169 2.0e-57 226.5 222 81.1
PGSC0003DMG400021431 Solanum tuberosum HOM05D016759 ORTHO05D000169 1.5e-52 210.3 223 73.5
Sopen02g036670 Solanum pennellii HOM05D016759 ORTHO05D000169 2.2e-43 179.9 222 72.5
Solyc02g092090.3 Solanum lycopersicum HOM05D016759 ORTHO05D000169 1.1e-42 177.6 222 72.1
CAN.G1343.5 Capsicum annuum HOM05D016759 ORTHO05D000169 8.1e-38 161.4 230 67.8
Peaxi162Scf00548g00014 Petunia axillaris HOM05D000754 ORTHO05D000169 3.8e-27 125.9 118 76.3
Lj7P112T12 Lonicera japonica HOM05D000754 ORTHO05D000169 3.3e-23 112.8 206 43.7
Cc07_g07330 Coffea canephora HOM05D000754 ORTHO05D000169 1.2e-22 110.9 222 42.8
Oeu013337.1 Olea europaea HOM05D000754 ORTHO05D000169 1.8e-21 107.1 220 35.9
Hma1.2p1_1139F.1_g260890 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 5.2e-21 105.5 223 35.0
PGSC0003DMG400005476 Solanum tuberosum HOM05D000697 ORTHO05D000169 8.4e-19 98.2 218 34.4
Oeu032433.1 Olea europaea HOM05D000754 ORTHO05D000169 1.1e-18 97.8 216 32.9
Migut.H00326 Erythranthe guttata HOM05D000754 ORTHO05D000169 4.2e-18 95.9 205 36.6
Thecc.01G075900 Theobroma cacao HOM05D000754 ORTHO05D000169 9.3e-18 94.7 224 37.5
vmacro23300 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 3.0e-16 89.7 265 43.4
CSS0034114 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 3.9e-16 89.4 75 60.0
Duzib264G0179 Durio zibethinus HOM05D000754 ORTHO05D000169 5.1e-16 89.0 216 32.4
MD02G1189300 Malus domestica HOM05D000754 ORTHO05D000169 5.1e-16 89.0 222 34.7
Nitab4.5_0006965g0010 Nicotiana tabacum HOM05D000754 ORTHO05D000169 5.1e-16 89.0 266 35.7
TWI74G1229 Tripterygium wilfordii HOM05D000754 ORTHO05D000169 6.6e-16 88.6 215 31.6
Manes.13G109400 Manihot esculenta HOM05D000754 ORTHO05D000169 8.7e-16 88.2 217 32.3
Gohir.D12G076700 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.5e-15 87.4 75 61.3
Oeu033308.1 Olea europaea HOM05D000754 ORTHO05D000169 3.3e-15 86.3 209 32.5
Ciclev10027584m.g Citrus clementina HOM05D000754 ORTHO05D000169 7.3e-15 85.1 74 59.5
Gorai.008G085300 Gossypium raimondii HOM05D000754 ORTHO05D000169 9.6e-15 84.7 75 60.0
Lj4P165T20 Lonicera japonica HOM05D000754 ORTHO05D000169 9.6e-15 84.7 74 58.1
COL.COLO4_11611 Corchorus olitorius HOM05D000754 ORTHO05D000169 1.3e-14 84.3 216 41.7
Prupe.6G217300 Prunus persica HOM05D000754 ORTHO05D000169 1.3e-14 84.3 233 36.1
QL06p038974 Quercus lobata HOM05D000754 ORTHO05D000169 2.1e-14 83.6 221 32.1
PGSC0003DMG400021433 Solanum tuberosum HOM05D016759 ORTHO05D000169 2.1e-14 83.6 53 79.2
Rhsim08G0091200 Rhododendron simsii HOM05D000754 ORTHO05D000169 2.8e-14 83.2 244 39.3
DCAR_010801 Daucus carota HOM05D000754 ORTHO05D000169 3.6e-14 82.8 207 29.0
Lsat_1_v5_gn_2_80220 Lactuca sativa HOM05D000754 ORTHO05D000169 4.8e-14 82.4 85 52.9
Rhsim08G0090600 Rhododendron simsii HOM05D000754 ORTHO05D000169 6.2e-14 82.0 74 58.1
vmacro18014 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 8.1e-14 81.6 75 58.7
CSS0007195 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 1.1e-13 81.3 199 42.2
Duzib187G1715 Durio zibethinus HOM05D000754 ORTHO05D000169 1.8e-13 80.5 220 33.2
Gohir.A02G149900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.8e-13 80.5 216 38.0
CSS0026493 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 2.4e-13 80.1 199 41.7
Gohir.D03G030500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.4e-13 80.1 75 53.3
Gorai.003G032100 Gossypium raimondii HOM05D000754 ORTHO05D000169 2.4e-13 80.1 75 53.3
Gohir.A11G048900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 3.1e-13 79.7 75 58.7
Gohir.A12G080000 Gossypium hirsutum HOM05D000754 ORTHO05D000169 4.0e-13 79.3 75 56.0
Potri.007G006900 Populus trichocarpa HOM05D000754 ORTHO05D000169 6.9e-13 78.6 216 34.3
DCAR_025821 Daucus carota HOM05D000754 ORTHO05D000169 9.0e-13 78.2 216 29.6
FAN26G0075 Fragaria x ananassa HOM05D000754 ORTHO05D000169 9.0e-13 78.2 228 33.3
Hma1.2p1_0424F.1_g150490 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 1.2e-12 77.8 204 30.4
Cpa.g.sc129.74 Carica papaya HOM05D000754 ORTHO05D000169 2.0e-12 77.0 74 54.1
FAN19G0912 Fragaria x ananassa HOM05D000754 ORTHO05D000169 2.0e-12 77.0 226 33.2
Gohir.D11G052500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 3.4e-12 76.3 75 56.0
Lsat_1_v5_gn_3_86301 Lactuca sativa HOM05D000754 ORTHO05D000169 7.6e-12 75.1 74 54.1
Potri.014G007100 Populus trichocarpa HOM05D000754 ORTHO05D000169 7.6e-12 75.1 216 31.5
CANSAT01G0483 Cannabis sativa HOM05D000754 ORTHO05D000169 9.9e-12 74.7 207 33.3
FAN28G2566 Fragaria x ananassa HOM05D000754 ORTHO05D000169 9.9e-12 74.7 75 52.0
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 1.3e-11 74.3 73 56.2
MD15G1300200 Malus domestica HOM05D000754 ORTHO05D000169 1.3e-11 74.3 227 31.3
Manes.12G117300 Manihot esculenta HOM05D000754 ORTHO05D000169 1.3e-11 74.3 80 53.8
SalBow3G0289 Salvia bowleyana HOM05D000754 ORTHO05D000169 1.3e-11 74.3 65 61.5
Atru.chr3.1056 Acer truncatum HOM05D000754 ORTHO05D000169 2.2e-11 73.6 73 54.8
FAN23G2905 Fragaria x ananassa HOM05D000754 ORTHO05D000169 3.8e-11 72.8 228 32.5
Gorai.007G056900 Gossypium raimondii HOM05D000754 ORTHO05D000169 3.8e-11 72.8 75 53.3
Duzib147G0338 Durio zibethinus HOM05D000754 ORTHO05D000169 4.9e-11 72.4 75 53.3
Gohir.A12G078400 Gossypium hirsutum HOM05D000754 ORTHO05D000169 4.9e-11 72.4 83 51.8
arahy.Tifrunner.gnm1.ann1.449CV2 Arachis hypogaea HOM05D000754 ORTHO05D000169 6.4e-11 72.0 75 50.7
HanXRQChr07g0189251 Helianthus annuus HOM05D000754 ORTHO05D000169 8.4e-11 71.6 74 48.6
Sp7g35380 Schrenkiella parvula HOM05D000754 ORTHO05D000169 1.1e-10 71.2 74 54.1
arahy.Tifrunner.gnm1.ann1.JTRU7S Arachis hypogaea HOM05D000754 ORTHO05D000169 1.4e-10 70.9 75 49.3
Carub.0007s0252 Capsella rubella HOM05D000754 ORTHO05D000169 1.9e-10 70.5 63 58.7
CARHR246120 Cardamine hirsuta HOM05D000754 ORTHO05D000169 1.9e-10 70.5 63 60.3
CiPaw.01G002300 Carya illinoinensis HOM05D000754 ORTHO05D000169 1.9e-10 70.5 212 36.8
RcHm_v2.0_Chr2g0108691 Rosa chinensis HOM05D000754 ORTHO05D000169 1.9e-10 70.5 222 35.6
Sc03g0002510 Simmondsia chinensis HOM05D000697 ORTHO05D000169 1.9e-10 70.5 70 50.0
SGA_v2.0_scaffold15G07496 Striga asiatica HOM05D000754 ORTHO05D000169 2.4e-10 70.1 206 32.5
Aqoxy6G02482 Aquilegia oxysepala HOM05D000754 ORTHO05D000169 4.2e-10 69.3 65 52.3
Gorai.008G085200 Gossypium raimondii HOM05D000754 ORTHO05D000169 5.4e-10 68.9 83 49.4
Sabra14G0006500 Salix brachista HOM05D000754 ORTHO05D000169 5.4e-10 68.9 75 46.7
Gohir.D12G076600 Gossypium hirsutum HOM05D000754 ORTHO05D000169 7.1e-10 68.6 83 48.2
vmacro23468 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 7.1e-10 68.6 236 42.4
AT4G37730 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 9.3e-10 68.2 63 58.7
Thhalv10027117m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 9.3e-10 68.2 63 58.7
VMungo1215G0337 Vigna mungo HOM05D000754 ORTHO05D000169 9.3e-10 68.2 73 52.1
PGR004G2429 Punica granatum HOM05D000754 ORTHO05D000169 1.2e-09 67.8 73 49.3
TAR628G1392 Trochodendron aralioides HOM05D000754 ORTHO05D000169 2.1e-09 67.0 62 51.6
C01p01480 Brassica napus HOM05D000754 ORTHO05D000169 2.7e-09 66.6 74 51.4
Nn6g34519 Nelumbo nucifera HOM05D000754 ORTHO05D000169 2.7e-09 66.6 195 28.2
C02p64350 Brassica napus HOM05D000754 ORTHO05D000169 6.0e-09 65.5 74 43.2
Aa31LG6G14610 Aethionema arabicum HOM05D000754 ORTHO05D000169 7.9e-09 65.1 62 56.5
A01p01320 Brassica napus HOM05D000754 ORTHO05D000169 7.9e-09 65.1 74 50.0
BraA01t00129Z Brassica rapa HOM05D000754 ORTHO05D000169 7.9e-09 65.1 74 50.0
BcaC06g33372 Brassica carinata HOM05D000754 ORTHO05D000169 1.0e-08 64.7 74 50.0
Nn5g30657 Nelumbo nucifera HOM05D000754 ORTHO05D000169 1.0e-08 64.7 62 50.0
PGR102G3091 Punica granatum HOM05D000754 ORTHO05D000169 1.0e-08 64.7 216 35.2
A02p44090 Brassica napus HOM05D000754 ORTHO05D000169 1.3e-08 64.3 74 41.9
BraA02t09332Z Brassica rapa HOM05D000754 ORTHO05D000169 1.3e-08 64.3 74 41.9
HanXRQChr14g0445391 Helianthus annuus HOM05D000754 ORTHO05D000169 1.3e-08 64.3 74 48.6
HanXRQChr09g0255311 Helianthus annuus HOM05D000754 ORTHO05D000169 1.8e-08 63.9 74 44.6
unitig_52.g17604 Utricularia gibba HOM05D000754 ORTHO05D000169 1.8e-08 63.9 74 45.9
BcaC03g18357 Brassica carinata HOM05D000754 ORTHO05D000169 2.3e-08 63.5 74 41.9
BolC1t00145H Brassica oleracea HOM05D000754 ORTHO05D000169 2.3e-08 63.5 74 50.0
BolC2t12498H Brassica oleracea HOM05D000754 ORTHO05D000169 2.3e-08 63.5 74 41.9
AL7G12950 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 3.0e-08 63.2 63 54.0
Cfa004385 Carpinus fangiana HOM05D000754 ORTHO05D000169 3.0e-08 63.2 220 39.1
Lj4g0006564 Lotus japonicus HOM05D000754 ORTHO05D000169 3.0e-08 63.2 212 27.8
AUR62004028 Chenopodium quinoa HOM05D000754 ORTHO05D000169 3.9e-08 62.8 68 48.5
MBI16_g45152_MAGBIO Magnolia biondii HOM05D000754 ORTHO05D000169 3.9e-08 62.8 61 54.1
CARHR279860 Cardamine hirsuta HOM05D000754 ORTHO05D000169 5.1e-08 62.4 74 40.5
Glyma.01G195800 Glycine max HOM05D000754 ORTHO05D000169 5.1e-08 62.4 73 49.3
C07p62610 Brassica napus HOM05D000754 ORTHO05D000169 6.7e-08 62.0 84 46.4
Sc07g0000450 Simmondsia chinensis HOM05D000754 ORTHO05D000169 8.7e-08 61.6 77 42.9
THA.LOC104804197 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 8.7e-08 61.6 74 47.3
Glyma.11G045900 Glycine max HOM05D000754 ORTHO05D000169 1.5e-07 60.8 73 47.9
THA.LOC104827731 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 1.5e-07 60.8 74 37.8
TAR376G1084 Trochodendron aralioides HOM05D000754 ORTHO05D000169 1.5e-07 60.8 195 29.7
Glyma.17G158900 Glycine max HOM05D000754 ORTHO05D000169 1.9e-07 60.5 75 42.7
Sp2g28950 Schrenkiella parvula HOM05D000754 ORTHO05D000169 1.9e-07 60.5 74 39.2
AL334U10020 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 2.5e-07 60.1 74 41.9
MSTRG.2807 Avicennia marina HOM05D000754 ORTHO05D000169 5.6e-07 58.9 54 51.9
A03p65530 Brassica napus HOM05D000754 ORTHO05D000169 5.6e-07 58.9 74 45.9
MELO3C007655.2 Cucumis melo HOM05D000754 ORTHO05D000169 5.6e-07 58.9 69 44.9
BcaB02g09902 Brassica carinata HOM05D000754 ORTHO05D000169 7.4e-07 58.5 72 40.3
CAN.G1239.10 Capsicum annuum HOM05D000754 ORTHO05D000169 7.4e-07 58.5 61 52.5
CARHR114160 Cardamine hirsuta HOM05D000754 ORTHO05D000169 7.4e-07 58.5 62 46.8
CsaV3_6G044300 Cucumis sativus L. HOM05D000754 ORTHO05D000169 7.4e-07 58.5 69 43.5
Eucgr.H02330 Eucalyptus grandis HOM05D000754 ORTHO05D000169 7.4e-07 58.5 64 53.1
HanXRQChr12g0376421 Helianthus annuus HOM05D000754 ORTHO05D000169 7.4e-07 58.5 74 44.6
THA.LOC104819272 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 7.4e-07 58.5 74 40.5
Glyma.05G108200 Glycine max HOM05D000754 ORTHO05D000169 9.6e-07 58.2 74 39.2
Phvul.002G009200 Phaseolus vulgaris HOM05D000754 ORTHO05D000169 9.6e-07 58.2 73 47.9
AL4G12430 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 1.3e-06 57.8 62 46.8
MSTRG.22210 Avicennia marina HOM05D000754 ORTHO05D000169 1.3e-06 57.8 55 54.5
Psat0ss26165g0040 Pisum sativum HOM05D000754 ORTHO05D000169 1.3e-06 57.8 74 43.2
Medtr4g097440 Medicago truncatula HOM05D000754 ORTHO05D000169 1.6e-06 57.4 74 41.9
AL8G43580 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 2.1e-06 57.0 74 40.5
Medtr5g015090 Medicago truncatula HOM05D000754 ORTHO05D000169 2.8e-06 56.6 73 45.2
Sp4g01890 Schrenkiella parvula HOM05D000754 ORTHO05D000169 2.8e-06 56.6 63 44.4
SpUn0042_0040 Schrenkiella parvula HOM05D000754 ORTHO05D000169 2.8e-06 56.6 63 44.4
Thhalv10000309m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 3.6e-06 56.2 63 44.4
SalBow2G1956 Salvia bowleyana HOM05D000754 ORTHO05D000169 4.8e-06 55.8 60 48.3
Sopen02g036690 Solanum pennellii HOM05D016759 ORTHO05D000169 4.8e-06 55.8 49 67.3
HPP92_007710 Vanilla planifolia HOM05D000754 ORTHO05D000169 4.8e-06 55.8 61 49.2
Ca_22096_v3 Cicer arietinum L. HOM05D000754 ORTHO05D000169 6.2e-06 55.5 72 43.1
Thhalv10005352m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 8.1e-06 55.1 70 38.6


User provided reference genes

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