Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.7e-206 722.6 414 100.0
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 6.9e-176 620.9 413 89.6
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 3.4e-146 522.3 420 79.5
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 2.2e-145 519.6 468 72.9
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 4.2e-141 505.4 500 68.2
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 3.6e-140 502.3 476 70.2
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 5.2e-139 498.4 500 67.6
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 9.2e-120 434.5 423 63.6
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 4.0e-115 419.1 414 61.6
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 4.0e-107 392.5 416 58.7
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 5.2e-107 392.1 403 59.3
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 6.8e-107 391.7 409 59.4
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.6e-106 389.8 393 59.8
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.4e-106 389.4 418 57.4
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.8e-106 388.7 393 59.8
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 5.8e-106 388.7 393 59.8
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.2e-105 386.7 403 59.1
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 2.9e-105 386.3 422 58.5
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 4.1e-104 382.5 417 57.3
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.2e-103 380.9 418 57.2
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.1e-103 380.2 403 58.8
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 6.0e-103 378.6 397 57.4
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 7.8e-103 378.3 430 56.3
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.7e-102 377.1 355 64.5
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 3.0e-102 376.3 403 57.8
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 5.1e-102 375.6 408 57.4
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 5.6e-101 372.1 352 61.6
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 7.3e-101 371.7 397 59.2
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.2e-100 370.9 416 56.7
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 4.7e-100 369.0 425 58.8
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.4e-99 367.5 395 56.7
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 8.9e-99 364.8 419 56.8
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.5e-98 364.0 407 57.2
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.9e-97 359.8 420 54.8
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 2.9e-97 359.8 422 55.5
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.1e-96 357.8 415 57.1
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.4e-96 357.5 421 56.8
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.9e-96 357.1 418 56.5
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-95 354.0 327 63.0
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.7e-95 353.2 368 59.0
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 4.6e-95 352.4 419 54.7
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 6.0e-95 352.1 423 54.4
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 1.0e-94 351.3 417 55.4
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.7e-94 350.5 378 57.9
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.7e-94 350.5 423 54.1
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 3.9e-94 349.4 423 57.4
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 8.7e-94 348.2 412 55.6
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.1e-93 347.8 437 53.3
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 5.6e-93 345.5 352 58.8
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 7.3e-93 345.1 437 52.6
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 9.6e-93 344.7 410 56.1
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.3e-92 344.4 370 58.1
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.3e-92 344.4 370 58.1
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 2.8e-92 343.2 387 55.8
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 4.8e-92 342.4 407 55.0
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 6.2e-92 342.0 410 52.4
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 2.4e-91 340.1 481 51.4
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 5.3e-91 339.0 408 53.2
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.5e-90 337.4 419 53.7
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 2.0e-90 337.0 416 54.3
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 5.8e-90 335.5 410 55.4
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 5.8e-90 335.5 424 56.1
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.9e-88 330.5 400 53.2
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.2e-88 329.3 427 52.5
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 7.1e-88 328.6 381 56.4
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 1.2e-87 327.8 417 53.0
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.2e-87 327.8 431 51.3
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 6.0e-87 325.5 360 58.1
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 1.3e-86 324.3 426 57.7
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.8e-86 323.9 426 52.3
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 3.9e-86 322.8 421 51.5
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 6.7e-86 322.0 414 55.3
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.5e-85 320.9 429 51.7
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.1e-84 317.0 421 51.8
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 2.1e-84 317.0 425 56.0
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 3.6e-84 316.2 386 52.3
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 4.8e-84 315.8 359 54.0
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 4.8e-84 315.8 435 51.7
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.1e-83 314.7 408 51.2
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 7.6e-82 308.5 386 53.1
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 2.2e-81 307.0 468 47.2
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 6.4e-81 305.4 365 54.0
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 1.9e-80 303.9 467 48.6
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 2.4e-80 303.5 470 47.4
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 7.1e-80 302.0 425 51.3
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 7.1e-80 302.0 448 52.7
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 9.3e-80 301.6 358 54.5
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 9.3e-80 301.6 415 50.1
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 9.3e-80 301.6 382 53.7
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.6e-79 300.8 496 44.4
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 3.5e-79 299.7 447 47.9
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 4.6e-79 299.3 462 47.6
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 7.9e-79 298.5 462 48.1
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.0e-78 298.1 462 47.4
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 3.9e-78 296.2 385 51.9
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 5.1e-78 295.8 297 60.3
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 1.5e-77 294.3 469 46.1
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.9e-77 293.9 400 49.8
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 4.3e-77 292.7 387 49.4
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 1.3e-76 291.2 401 49.4
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 2.8e-76 290.0 413 48.2
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.7e-73 280.8 415 49.9
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.7e-73 280.8 475 44.0
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 2.5e-72 276.9 377 57.0
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 3.2e-72 276.6 341 52.2
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 5.5e-72 275.8 278 57.9
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 2.1e-71 273.9 353 49.9
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 6.0e-71 272.3 426 49.5
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 6.3e-68 262.3 424 46.5
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 3.1e-67 260.0 357 50.1
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.5e-66 257.7 386 47.4
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 8.5e-65 251.9 371 45.3
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 6.5e-57 225.7 266 55.3
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 2.5e-56 223.8 366 44.0
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 3.2e-56 223.4 374 42.2
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 9.4e-56 221.9 313 49.5
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.8e-54 217.6 370 45.1
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 3.9e-54 216.5 369 45.8
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 5.1e-54 216.1 360 44.2
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.1e-53 214.9 302 50.0
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.1e-53 214.9 392 43.1
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 1.0e-49 201.8 315 47.3
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.9e-49 200.3 420 36.7
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 1.1e-48 198.4 395 43.3
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 5.5e-48 196.1 336 45.5
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 5.3e-43 179.5 134 73.9
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 9.4e-32 142.1 289 42.2
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 2.7e-31 140.6 361 37.1
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.6e-31 140.2 101 73.3
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.2e-29 135.2 386 36.3
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 1.7e-25 121.3 80 78.8
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 4.7e-23 113.2 239 38.1
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 1.2e-21 108.6 80 73.8
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.0e-21 107.8 70 75.7
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 7.5e-21 105.9 82 72.0
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 9.2e-19 99.0 77 63.6
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 3.5e-18 97.1 67 70.1
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 4.5e-18 96.7 67 68.7
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 8.6e-17 92.4 347 28.8
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.9e-16 91.3 66 69.7
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 1.9e-16 91.3 178 43.8
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.6e-15 87.0 164 39.0
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.7e-15 86.7 56 75.0
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 4.0e-14 83.6 347 32.0
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 5.2e-14 83.2 126 44.4
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 9.2e-11 72.4 97 46.4
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 1.1e-06 58.9 101 43.6
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.8e-06 56.2 51 58.8
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.8e-06 56.2 51 58.8
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.8e-06 56.2 51 58.8
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.8e-06 56.2 51 58.8
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 8.9e-06 55.8 51 58.8


User provided reference genes

Program Settings