Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1951.0 984 100.0
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1864.0 984 95.3
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1669.8 984 83.8
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1660.2 983 82.4
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1654.8 987 82.0
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1654.4 984 82.0
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1654.4 984 81.9
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1592.0 953 82.2
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1507.7 897 82.9
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1501.5 984 74.2
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1483.4 984 73.1
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1481.1 985 74.3
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1477.2 984 72.4
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1473.0 954 74.2
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1470.7 986 72.7
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1467.2 984 72.1
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1461.4 985 72.9
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1457.2 984 72.8
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1450.6 984 70.4
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1449.5 985 72.2
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1448.0 983 72.1
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1446.4 984 71.6
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1446.0 985 72.0
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1443.7 984 71.7
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1442.9 983 71.3
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1439.9 993 71.0
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1439.1 971 71.6
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1437.6 984 70.9
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1433.7 984 70.6
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1430.6 986 70.7
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1427.2 985 71.3
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1426.0 984 71.1
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1422.5 986 70.2
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1421.4 1079 66.1
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1415.2 982 70.0
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1411.0 984 70.4
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1409.8 985 69.5
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1409.4 986 69.9
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1408.3 1078 65.7
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1408.3 988 68.6
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1406.7 986 70.2
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1405.6 985 70.2
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1405.2 1006 69.6
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1404.4 984 69.8
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1403.7 984 69.8
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1403.7 984 69.1
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1402.9 983 70.0
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1399.4 984 68.3
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1397.5 984 68.9
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1396.3 984 68.2
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1395.9 1007 67.8
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1391.7 978 68.9
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1389.4 985 69.2
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1389.4 983 68.6
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1389.0 985 69.3
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1387.9 984 69.2
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1385.2 987 69.0
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1384.4 985 69.0
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1383.6 984 67.7
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1379.4 985 68.9
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1377.8 984 67.5
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1375.1 984 67.3
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1372.5 984 67.4
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1371.3 983 68.7
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1370.9 984 67.1
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1370.1 985 67.8
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1369.8 985 67.6
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1369.0 984 66.8
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1367.8 984 67.6
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1367.4 985 67.5
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1367.4 984 68.3
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1366.3 984 67.1
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1365.5 984 67.1
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1364.4 984 66.8
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1364.0 984 67.4
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1363.2 984 66.6
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1363.2 984 66.4
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1361.7 985 66.9
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1361.3 987 67.5
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1359.7 984 67.1
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1359.0 984 66.7
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1359.0 999 66.2
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1358.2 984 67.0
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1355.5 984 66.1
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1353.2 984 66.6
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1352.8 984 66.8
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1352.4 984 66.5
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1350.9 985 66.4
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1350.5 984 66.4
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1349.3 985 66.4
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1347.4 984 66.2
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1345.9 986 65.7
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1345.9 986 65.9
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1344.3 984 66.1
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1343.6 984 66.3
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1341.3 955 67.6
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1338.6 1004 65.0
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1337.0 986 65.2
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1335.9 1011 64.7
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1332.8 981 65.7
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1330.1 1014 65.6
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1328.9 992 66.8
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1326.6 981 65.3
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1324.7 987 64.8
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1321.6 987 66.5
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1318.5 993 66.8
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1314.3 900 70.9
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1289.2 984 65.5
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1288.5 984 65.3
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1287.3 999 63.7
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1286.9 968 65.6
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1261.9 980 63.2
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1253.0 984 63.6
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1241.5 984 63.0
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1237.6 979 62.3
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1232.6 984 62.2
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1210.3 1013 60.8
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1206.8 991 58.8
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1199.9 976 59.2
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1190.3 882 65.6
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1184.9 976 58.4
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1145.6 847 65.3
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1124.0 848 64.0
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 2.3e-310 1068.9 953 56.8
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 1.5e-309 1066.2 809 63.4
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.5e-285 986.5 990 51.9
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 2.8e-284 982.2 991 50.8
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 5.9e-258 894.8 659 65.9
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.2e-252 876.3 541 77.6
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 6.1e-247 858.2 955 47.5
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.4e-246 857.1 688 61.2
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 8.0e-231 804.7 658 60.2
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 2.4e-211 740.0 880 43.8
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.1e-203 714.5 530 67.2
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.4e-187 661.0 809 47.6
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.2e-167 594.0 362 77.3
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.0e-157 560.8 420 66.9
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 4.2e-155 553.1 916 38.1
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 2.8e-143 513.8 296 85.1
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 4.8e-143 513.1 296 84.8
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 5.0e-132 476.5 281 83.3
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-129 468.4 844 35.7
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.4e-121 441.8 1048 31.6
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.6e-109 400.2 255 76.1
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 5.6e-107 393.3 330 59.4
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 4.7e-106 390.2 663 40.9
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 3.0e-100 370.9 1013 30.1
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 7.6e-96 356.3 380 48.7
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.2e-88 332.4 319 52.4
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.6e-77 295.4 256 57.8
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 2.1e-77 295.0 444 39.4
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 4.8e-74 283.9 362 43.9
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 6.9e-57 226.9 251 46.6
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 2.6e-56 224.9 185 58.4
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 7.7e-56 223.4 147 78.2
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 1.1e-51 209.5 129 77.5
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 1.3e-50 206.1 125 79.2
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 4.5e-48 197.6 140 65.7
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 6.5e-47 193.7 1027 22.6
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 1.1e-46 193.0 203 59.6
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.5e-46 191.8 125 76.0
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 3.6e-45 188.0 105 83.8
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 3.0e-36 158.3 101 73.3
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 6.7e-36 157.1 101 73.3
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 6.7e-36 157.1 101 73.3
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 4.5e-32 144.4 182 47.3
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 8.5e-31 140.2 85 82.4
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 9.1e-25 120.2 82 69.5
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 8.0e-21 107.1 121 53.7
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 8.0e-21 107.1 121 53.7
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.0e-20 106.7 82 57.3
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 2.6e-19 102.1 71 70.4
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 2.8e-18 98.6 62 71.0
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 2.8e-18 98.6 53 83.0
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 2.8e-18 98.6 63 77.8
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 1.4e-17 96.3 72 69.4
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 1.8e-17 95.9 193 33.7
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.6e-16 92.8 137 43.1
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 8.6e-15 87.0 60 66.7
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 1.1e-14 86.7 47 78.7
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 4.7e-13 81.3 60 63.3
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.8e-12 79.3 60 61.7
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 1.7e-07 62.8 54 61.1
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 3.9e-07 61.6 115 31.3
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 6.6e-07 60.8 115 31.3


User provided reference genes

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