Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.7e-30 133.3 63 100.0
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 9.6e-21 102.8 60 81.7
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 9.6e-21 102.8 60 81.7
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 9.6e-21 102.8 60 81.7
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 5.3e-19 97.1 59 76.3
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 2.9e-17 91.3 60 68.3
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.2e-15 85.9 60 65.0
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.8e-14 82.0 61 63.9
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.9e-14 80.9 59 62.7
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 1.9e-13 78.6 60 60.0
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 3.7e-12 74.3 60 61.7
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.4e-11 71.6 47 70.2
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 4.1e-11 70.9 59 57.6
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 9.1e-11 69.7 63 50.8
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.2e-10 69.3 55 54.5
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 2.6e-10 68.2 64 54.7
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 3.4e-10 67.8 62 51.6
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 3.4e-10 67.8 62 51.6
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.4e-10 67.8 56 57.1
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 4.5e-10 67.4 42 69.0
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.5e-10 67.4 62 53.2
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.0e-09 66.2 58 53.4
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.0e-09 66.2 54 59.3
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.3e-09 65.9 52 61.5
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.7e-09 65.5 46 67.4
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.2e-09 65.1 52 55.8
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.2e-09 65.1 47 59.6
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 2.2e-09 65.1 38 68.4
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.8e-09 64.3 64 53.1
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 3.8e-09 64.3 54 59.3
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 5.0e-09 63.9 52 55.8
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 5.0e-09 63.9 55 50.9
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 5.0e-09 63.9 42 61.9
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 5.0e-09 63.9 42 61.9
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 5.0e-09 63.9 58 53.4
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 5.0e-09 63.9 61 49.2
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 8.5e-09 63.2 52 53.8
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 8.5e-09 63.2 38 65.8
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 8.5e-09 63.2 36 75.0
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 8.5e-09 63.2 43 60.5
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.1e-08 62.8 47 57.4
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-08 62.8 58 48.3
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.1e-08 62.8 40 65.0
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.4e-08 62.4 39 61.5
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.9e-08 62.0 53 56.6
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.5e-08 61.6 42 59.5
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 2.5e-08 61.6 56 51.8
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.5e-08 61.6 55 49.1
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.2e-08 61.2 41 68.3
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.2e-08 61.2 36 72.2
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.2e-08 61.2 36 72.2
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.2e-08 61.2 52 51.9
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.2e-08 60.8 60 51.7
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 5.5e-08 60.5 42 57.1
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 5.5e-08 60.5 42 57.1
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 5.5e-08 60.5 42 57.1
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 5.5e-08 60.5 42 57.1
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 5.5e-08 60.5 42 57.1
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 5.5e-08 60.5 53 58.5
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 7.2e-08 60.1 53 56.6
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 7.2e-08 60.1 41 61.0
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 7.2e-08 60.1 34 70.6
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 7.2e-08 60.1 36 72.2
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.2e-08 60.1 36 69.4
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.2e-08 60.1 38 60.5
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 7.2e-08 60.1 40 62.5
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 7.2e-08 60.1 42 57.1
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 7.2e-08 60.1 53 58.5
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 9.4e-08 59.7 42 64.3
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.4e-08 59.7 42 64.3
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.4e-08 59.7 42 64.3
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.4e-08 59.7 42 64.3
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 9.4e-08 59.7 38 60.5
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 9.4e-08 59.7 46 58.7
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 9.4e-08 59.7 37 64.9
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.4e-08 59.7 56 51.8
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.2e-07 59.3 50 52.0
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.2e-07 59.3 43 62.8
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.2e-07 59.3 38 65.8
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.2e-07 59.3 41 61.0
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.6e-07 58.9 37 62.2
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.6e-07 58.9 64 45.3
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 1.6e-07 58.9 57 50.9
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.1e-07 58.5 37 64.9
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 2.1e-07 58.5 61 50.8
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 2.1e-07 58.5 34 70.6
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 2.7e-07 58.2 42 57.1
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.7e-07 58.2 46 52.2
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 3.6e-07 57.8 60 48.3
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 3.6e-07 57.8 42 57.1
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 4.6e-07 57.4 44 50.0
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 4.6e-07 57.4 44 50.0
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 4.6e-07 57.4 43 58.1
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 4.6e-07 57.4 46 52.2
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 4.6e-07 57.4 52 48.1
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 4.6e-07 57.4 52 50.0
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.6e-07 57.4 37 70.3
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.6e-07 57.4 64 45.3
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.6e-07 57.4 64 43.8
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.6e-07 57.4 59 49.2
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 4.6e-07 57.4 47 61.7
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 4.6e-07 57.4 39 66.7
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 6.1e-07 57.0 37 67.6
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 6.1e-07 57.0 38 68.4
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 6.1e-07 57.0 36 66.7
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 6.1e-07 57.0 38 65.8
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 6.1e-07 57.0 42 57.1
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 7.9e-07 56.6 42 52.4
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 7.9e-07 56.6 42 52.4
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 7.9e-07 56.6 50 52.0
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 7.9e-07 56.6 37 62.2
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 7.9e-07 56.6 64 46.9
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 7.9e-07 56.6 37 59.5
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 7.9e-07 56.6 58 48.3
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 7.9e-07 56.6 44 59.1
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 7.9e-07 56.6 37 64.9
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.0e-06 56.2 52 48.1
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.0e-06 56.2 50 50.0
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 1.0e-06 56.2 56 50.0
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.0e-06 56.2 34 70.6
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.0e-06 56.2 42 54.8
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.4e-06 55.8 41 56.1
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.4e-06 55.8 57 49.1
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.4e-06 55.8 45 62.2
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.4e-06 55.8 52 48.1
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.4e-06 55.8 58 46.6
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.8e-06 55.5 58 48.3
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.8e-06 55.5 55 47.3
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 1.8e-06 55.5 52 48.1
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.8e-06 55.5 33 66.7
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.3e-06 55.1 37 59.5
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.3e-06 55.1 37 62.2
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.3e-06 55.1 37 62.2
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.3e-06 55.1 41 53.7
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.3e-06 55.1 43 55.8
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.3e-06 55.1 43 55.8
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.0e-06 54.7 60 50.0
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 3.0e-06 54.7 56 46.4
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 3.0e-06 54.7 52 48.1
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.0e-06 54.7 51 47.1
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.0e-06 54.7 45 53.3
Ah.08g210930 Amaranthus hybridus HOM05D040036 ORTHO05D004215 3.9e-06 54.3 64 48.4
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.9e-06 54.3 44 50.0
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 3.9e-06 54.3 46 58.7
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.1e-06 53.9 58 50.0
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 5.1e-06 53.9 50 48.0
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 5.1e-06 53.9 50 48.0
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 5.1e-06 53.9 39 56.4
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.1e-06 53.9 33 63.6
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 6.7e-06 53.5 52 46.2
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 8.8e-06 53.1 52 46.2


User provided reference genes

Program Settings