Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000131g0130 Nicotiana tabacum HOM05D000311 ORTHO05D000183 6.5e-102 374.8 311 100.0
Peaxi162Scf00454g00117 Petunia axillaris HOM05D000311 ORTHO05D000183 2.0e-63 246.9 298 71.5
Solyc04g076450.1 Solanum lycopersicum HOM05D000311 ORTHO05D000183 4.7e-60 235.7 301 81.7
PGSC0003DMG402009338 Solanum tuberosum HOM05D000311 ORTHO05D000183 6.8e-59 231.9 290 84.1
CAN.G475.11 Capsicum annuum HOM05D000311 ORTHO05D000183 6.4e-57 225.3 220 88.2
Sopen04g030210 Solanum pennellii HOM05D000311 ORTHO05D000183 7.8e-55 218.4 291 61.9
Cc10_g08420 Coffea canephora HOM05D000311 ORTHO05D000183 1.2e-44 184.5 302 73.8
Nn1g06211 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.3e-25 121.3 283 50.2
Nn5g27816 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.3e-25 121.3 316 46.2
Nn5g28559 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.9e-24 117.5 316 57.0
Nn5g28521 Nelumbo nucifera HOM05D000311 ORTHO05D000183 2.4e-24 117.1 317 57.4
Nn5g28557 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.7e-22 110.9 318 56.6
Manes.04G022650 Manihot esculenta HOM05D000311 ORTHO05D000183 1.1e-19 101.7 212 58.0
Duzib052G0915 Durio zibethinus HOM05D000311 ORTHO05D000183 6.9e-19 99.0 314 53.8
COL.COLO4_33048 Corchorus olitorius HOM05D000311 ORTHO05D000183 4.9e-17 92.8 206 57.3
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 8.4e-17 92.0 222 58.1
QL93p0073_1273 Quercus lobata HOM05D000311 ORTHO05D000183 7.1e-16 89.0 231 53.2
CiPaw.05G068500 Carya illinoinensis HOM05D000311 ORTHO05D000183 2.7e-15 87.0 233 51.5
Duzib132G0733 Durio zibethinus HOM05D000311 ORTHO05D000183 1.0e-14 85.1 222 55.9
Haze_08221 Corylus avellana HOM05D000311 ORTHO05D000183 5.1e-14 82.8 222 54.1
Nn3g19255 Nelumbo nucifera HOM05D000071 ORTHO05D000183 6.7e-14 82.4 232 54.3
CiPaw.05G069200 Carya illinoinensis HOM05D000311 ORTHO05D000183 8.7e-14 82.0 234 50.4
Gohir.D04G148300 Gossypium hirsutum HOM05D000311 ORTHO05D000183 8.7e-14 82.0 203 55.7
Gorai.012G134600 Gossypium raimondii HOM05D000311 ORTHO05D000183 8.7e-14 82.0 201 57.2
CiPaw.05G068700 Carya illinoinensis HOM05D000071 ORTHO05D000183 1.9e-13 80.9 233 50.2
ATR0598G293 Amborella trichopoda HOM05D017909 ORTHO05D012563 2.5e-13 80.5 314 53.5
CiPaw.05G069000 Carya illinoinensis HOM05D000311 ORTHO05D000183 3.3e-13 80.1 242 50.0
COL.COLO4_33050 Corchorus olitorius HOM05D000311 ORTHO05D000183 5.6e-13 79.3 195 56.9
Gohir.A04G108800 Gossypium hirsutum HOM05D000311 ORTHO05D000183 7.4e-13 79.0 201 54.2
HanXRQChr04g0097701 Helianthus annuus HOM05D000311 ORTHO05D000183 7.4e-13 79.0 259 48.3
CiPaw.05G068900 Carya illinoinensis HOM05D000311 ORTHO05D000183 1.6e-12 77.8 310 45.5
CiPaw.15G071900 Carya illinoinensis HOM05D000311 ORTHO05D000183 6.2e-12 75.9 234 49.1
CAN.G525.20 Capsicum annuum HOM05D000311 ORTHO05D000183 1.1e-11 75.1 283 44.5
CiPaw.06G133000 Carya illinoinensis HOM05D000311 ORTHO05D000183 3.1e-11 73.6 290 41.4
Cfa016335 Carpinus fangiana HOM05D000071 ORTHO05D000029 9.0e-11 72.0 317 52.7
Haze_08223 Corylus avellana HOM05D000311 ORTHO05D000183 1.2e-10 71.6 176 60.8
ATR0177G028 Amborella trichopoda HOM05D017909 ORTHO05D012563 1.5e-10 71.2 312 52.9
Manes.09G007400 Manihot esculenta HOM05D000071 ORTHO05D000029 1.5e-10 71.2 307 43.0
Cfa000855 Carpinus fangiana HOM05D000071 ORTHO05D000029 2.0e-10 70.9 334 49.7
Nn5g28555 Nelumbo nucifera HOM05D000311 ORTHO05D012563 2.6e-10 70.5 165 52.1
QL05p013130 Quercus lobata HOM05D000311 ORTHO05D000183 3.4e-10 70.1 193 57.5
EL10Ac9g21892 Beta vulgaris HOM05D000311 ORTHO05D000183 4.5e-10 69.7 181 47.5
CiPaw.01G103000 Carya illinoinensis HOM05D000311 ORTHO05D000183 7.6e-10 68.9 198 58.1
CiPaw.05G068300 Carya illinoinensis HOM05D000311 ORTHO05D000183 7.6e-10 68.9 234 47.9
ATR0598G314 Amborella trichopoda HOM05D000311 ORTHO05D012563 1.0e-09 68.6 218 54.6
TWI60G1606 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 1.0e-09 68.6 230 51.3
Haze_00084 Corylus avellana HOM05D000071 ORTHO05D000029 8.4e-09 65.5 314 51.3
QL05p087055 Quercus lobata HOM05D000071 ORTHO05D000029 8.4e-09 65.5 226 52.2
QL93p0310_0029 Quercus lobata HOM05D000071 ORTHO05D000029 8.4e-09 65.5 312 41.7
Duzib212G0734 Durio zibethinus HOM05D000311 ORTHO05D000183 1.1e-08 65.1 186 47.3
QL05p014051 Quercus lobata HOM05D000311 ORTHO05D000183 1.4e-08 64.7 190 58.4
ATR0219G014 Amborella trichopoda HOM05D038145 ORTHO05D038318 1.9e-08 64.3 220 53.6
Haze_24812 Corylus avellana HOM05D000071 ORTHO05D000029 1.9e-08 64.3 295 53.9
Ciclev10007379m.g Citrus clementina HOM05D000071 ORTHO05D000029 3.2e-08 63.5 219 52.5
Ciclev10010776m.g Citrus clementina HOM05D000071 ORTHO05D000029 3.2e-08 63.5 219 52.5
Nitab4.5_0002569g0050 Nicotiana tabacum HOM05D000311 ORTHO05D000183 3.2e-08 63.5 233 51.1
Ciclev10010171m.g Citrus clementina HOM05D000071 ORTHO05D000029 4.2e-08 63.2 219 52.5
QL05p012871 Quercus lobata HOM05D000311 ORTHO05D000183 4.2e-08 63.2 222 51.8
CiPaw.01G103300 Carya illinoinensis HOM05D000311 ORTHO05D000183 5.5e-08 62.8 188 59.0
COL.COLO4_11857 Corchorus olitorius HOM05D000311 ORTHO05D000183 5.5e-08 62.8 334 40.4
CSS0020490 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 7.1e-08 62.4 312 42.3
Eucgr.B03474 Eucalyptus grandis HOM05D000071 ORTHO05D000029 7.1e-08 62.4 313 52.4
QL04p093590 Quercus lobata HOM05D000071 ORTHO05D000029 7.1e-08 62.4 312 41.3
QL05p024177 Quercus lobata HOM05D000071 ORTHO05D000029 9.3e-08 62.0 313 40.9
CAN.G3566.2 Capsicum annuum HOM05D000311 ORTHO05D000183 1.2e-07 61.6 283 55.5
CAN.G525.24 Capsicum annuum HOM05D000311 ORTHO05D000183 1.2e-07 61.6 283 55.5
CAN.G525.26 Capsicum annuum HOM05D000311 ORTHO05D000183 1.2e-07 61.6 283 55.5
Dinv32122 Davidia involucrata HOM05D000071 ORTHO05D000029 1.2e-07 61.6 218 50.0
QL05p023568 Quercus lobata HOM05D000071 ORTHO05D000029 1.2e-07 61.6 313 40.9
Haze_20328 Corylus avellana HOM05D000311 ORTHO05D000183 1.6e-07 61.2 170 28.8
Haze_21507 Corylus avellana HOM05D000071 ORTHO05D000029 1.6e-07 61.2 264 57.2
Hma1.2p1_0747F.1_g212480 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 1.6e-07 61.2 168 27.4
QL05p024087 Quercus lobata HOM05D000071 ORTHO05D000029 1.6e-07 61.2 317 41.0
Sed0023420 Sechium edule HOM05D000311 ORTHO05D000183 2.1e-07 60.8 281 56.2
HanXRQChr04g0098161 Helianthus annuus HOM05D000311 ORTHO05D000183 2.7e-07 60.5 283 56.2
Oeu034160.1 Olea europaea HOM05D000311 ORTHO05D000183 2.7e-07 60.5 185 57.3
Atru.chr2.3396 Acer truncatum HOM05D000071 ORTHO05D000029 3.5e-07 60.1 217 51.2
EL10Ac8g18790 Beta vulgaris HOM05D000311 ORTHO05D000183 3.5e-07 60.1 307 54.1
CSS0041362 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 3.5e-07 60.1 320 42.5
MELO3C023441.2 Cucumis melo HOM05D000311 ORTHO05D000183 3.5e-07 60.1 182 46.2
Oeu029697.1 Olea europaea HOM05D000311 ORTHO05D000183 3.5e-07 60.1 161 64.6
Sed0004993 Sechium edule HOM05D000311 ORTHO05D000183 3.5e-07 60.1 189 46.0
HanXRQChr04g0098171 Helianthus annuus HOM05D000311 ORTHO05D000183 4.6e-07 59.7 289 56.7
Eucgr.B03475 Eucalyptus grandis HOM05D000071 ORTHO05D000029 6.0e-07 59.3 192 54.2
HanXRQChr04g0097591 Helianthus annuus HOM05D000311 ORTHO05D000183 6.0e-07 59.3 278 34.9
QL05p086723 Quercus lobata HOM05D000071 ORTHO05D000029 6.0e-07 59.3 316 40.8
CiPaw.12G006600 Carya illinoinensis HOM05D000311 ORTHO05D000183 7.9e-07 58.9 222 30.6
CiPaw.12G006800 Carya illinoinensis HOM05D000311 ORTHO05D000183 7.9e-07 58.9 221 52.0
Gohir.A11G294123 Gossypium hirsutum HOM05D000071 ORTHO05D000029 7.9e-07 58.9 218 50.9
Lsat_1_v5_gn_7_51101 Lactuca sativa HOM05D000071 ORTHO05D000029 7.9e-07 58.9 182 61.0
Medtr6g039110 Medicago truncatula HOM05D000071 ORTHO05D000029 7.9e-07 58.9 313 39.3
Nitab4.5_0000443g0080 Nicotiana tabacum HOM05D000071 ORTHO05D000029 7.9e-07 58.9 219 53.0
QL02p090841 Quercus lobata HOM05D000311 ORTHO05D000183 7.9e-07 58.9 140 71.4
ATR0184G035 Amborella trichopoda HOM05D000311 ORTHO05D000183 1.0e-06 58.5 219 50.2
Duzib112G0005 Durio zibethinus HOM05D000071 ORTHO05D000029 1.0e-06 58.5 312 41.3
Gorai.007G337100 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.0e-06 58.5 311 42.1
Peaxi162Scf01205g00183 Petunia axillaris HOM05D000311 ORTHO05D000183 1.0e-06 58.5 154 66.9
RcHm_v2.0_Chr5g0069481 Rosa chinensis HOM05D000071 ORTHO05D000029 1.0e-06 58.5 221 51.1
SEGI_25748 Sequoiadendron giganteum HOM05D000071 ORTHO05D000029 1.0e-06 58.5 145 69.0
Duzib268G0464 Durio zibethinus HOM05D000053 ORTHO05D000035 1.3e-06 58.2 272 46.0
Gorai.007G340100 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.3e-06 58.2 218 51.8
Hund09122 Selenicereus undatus HOM05D000311 ORTHO05D000183 1.3e-06 58.2 157 67.5
Actinidia26343 Actinidia chinensis HOM05D000311 ORTHO05D000183 1.8e-06 57.8 193 55.4
arahy.Tifrunner.gnm1.ann1.UY3KLE Arachis hypogaea HOM05D000071 ORTHO05D000029 1.8e-06 57.8 316 41.1
Lsat_1_v5_gn_8_157940 Lactuca sativa HOM05D000071 ORTHO05D000029 1.8e-06 57.8 305 44.6
Nitab4.5_0004349g0020 Nicotiana tabacum HOM05D000311 ORTHO05D000183 1.8e-06 57.8 231 50.6
MBI04_g21137_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 2.3e-06 57.4 79 38.0
Oeu010079.1 Olea europaea HOM05D000311 ORTHO05D000183 2.3e-06 57.4 138 72.5
Potri.005G013200 Populus trichocarpa HOM05D000311 ORTHO05D000183 2.3e-06 57.4 208 52.4
QL04p093548 Quercus lobata HOM05D000071 ORTHO05D000029 2.3e-06 57.4 312 41.3
GSVIVG01024424001 Vitis vinifera HOM05D000071 ORTHO05D000029 2.3e-06 57.4 218 49.5
Ciclev10017769m.g Citrus clementina HOM05D000071 ORTHO05D000029 3.0e-06 57.0 226 49.1
Duzib184G0001 Durio zibethinus HOM05D000311 ORTHO05D000183 3.0e-06 57.0 186 45.2
Duzib214G0001 Durio zibethinus HOM05D000311 ORTHO05D000183 3.0e-06 57.0 186 45.2
Gohir.A13G060733 Gossypium hirsutum HOM05D022453 ORTHO05D025687 3.0e-06 57.0 167 59.9
Gohir.A13G060766 Gossypium hirsutum HOM05D022453 ORTHO05D025687 3.0e-06 57.0 167 59.9
Medtr5g047390 Medicago truncatula HOM05D000071 ORTHO05D000029 3.0e-06 57.0 194 56.2
QL05p014014 Quercus lobata HOM05D000311 ORTHO05D000183 3.0e-06 57.0 157 66.2
Sopen04g006530 Solanum pennellii HOM05D000311 ORTHO05D000183 3.0e-06 57.0 162 63.0
Cc06_g17020 Coffea canephora HOM05D000071 ORTHO05D000029 3.9e-06 56.6 219 50.7
Duzib212G0961 Durio zibethinus HOM05D000311 ORTHO05D000183 3.9e-06 56.6 272 57.7
Nitab4.5_0010327g0010 Nicotiana tabacum HOM05D000311 ORTHO05D000183 3.9e-06 56.6 168 62.5
Potri.005G011600 Populus trichocarpa HOM05D000311 ORTHO05D000183 3.9e-06 56.6 188 55.3
RcHm_v2.0_Chr5g0020741 Rosa chinensis HOM05D000071 ORTHO05D000029 3.9e-06 56.6 219 47.0
Cfa001788 Carpinus fangiana HOM05D000311 ORTHO05D000183 5.1e-06 56.2 68 44.1
Duzib212G0223 Durio zibethinus HOM05D000311 ORTHO05D000183 5.1e-06 56.2 186 44.1
Eucgr.F02778 Eucalyptus grandis HOM05D000053 ORTHO05D000035 5.1e-06 56.2 265 44.5
Gohir.D11G308433 Gossypium hirsutum HOM05D000071 ORTHO05D000029 5.1e-06 56.2 218 50.5
Gorai.007G339700 Gossypium raimondii HOM05D000071 ORTHO05D000029 5.1e-06 56.2 218 50.5
Oeu011159.1 Olea europaea HOM05D000311 ORTHO05D000183 5.1e-06 56.2 138 71.7
Potri.005G007600 Populus trichocarpa HOM05D000311 ORTHO05D000183 5.1e-06 56.2 189 56.6
Potri.005G013100 Populus trichocarpa HOM05D000311 ORTHO05D000183 5.1e-06 56.2 189 55.0
Potri.005G013400 Populus trichocarpa HOM05D000311 ORTHO05D000183 5.1e-06 56.2 189 55.6
QL05p014144 Quercus lobata HOM05D000311 ORTHO05D000183 5.1e-06 56.2 194 55.2
TAR626G1673 Trochodendron aralioides HOM05D000311 ORTHO05D000183 5.1e-06 56.2 338 47.6
ATR0925G005 Amborella trichopoda HOM05D017909 ORTHO05D012563 6.7e-06 55.8 320 39.4
Ciclev10027313m.g Citrus clementina HOM05D000311 ORTHO05D000183 6.7e-06 55.8 157 65.0
Haze_16756 Corylus avellana HOM05D000311 ORTHO05D000183 6.7e-06 55.8 155 66.5
Haze_21508 Corylus avellana HOM05D000071 ORTHO05D000029 6.7e-06 55.8 175 45.7
Gohir.D02G026300 Gossypium hirsutum HOM05D000311 ORTHO05D000183 6.7e-06 55.8 149 67.8
Gorai.005G032200 Gossypium raimondii HOM05D000311 ORTHO05D000183 6.7e-06 55.8 182 58.8
Nn2g15947 Nelumbo nucifera HOM05D000311 ORTHO05D000183 6.7e-06 55.8 141 67.4
Nitab4.5_0000348g0230 Nicotiana tabacum HOM05D000311 ORTHO05D000183 6.7e-06 55.8 137 71.5
Phvul.004G099100 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 6.7e-06 55.8 232 47.8
Prupe.1G575300 Prunus persica HOM05D000071 ORTHO05D000029 6.7e-06 55.8 311 41.8
QL05p010005 Quercus lobata HOM05D000071 ORTHO05D000029 6.7e-06 55.8 193 55.4
arahy.Tifrunner.gnm1.ann1.7X7550 Arachis hypogaea HOM05D000311 ORTHO05D000183 8.7e-06 55.5 51 54.9
arahy.Tifrunner.gnm1.ann1.IS23K0 Arachis hypogaea HOM05D000311 ORTHO05D000183 8.7e-06 55.5 51 52.9
Cfa012621 Carpinus fangiana HOM05D000071 ORTHO05D000029 8.7e-06 55.5 79 32.9
COL.COLO4_20160 Corchorus olitorius HOM05D000311 ORTHO05D000183 8.7e-06 55.5 174 60.9
Dinv09261 Davidia involucrata HOM05D003254 ORTHO05D003713 8.7e-06 55.5 225 49.8
Duzib212G0651 Durio zibethinus HOM05D000311 ORTHO05D000183 8.7e-06 55.5 190 27.4
Gohir.A11G293941 Gossypium hirsutum HOM05D000071 ORTHO05D000029 8.7e-06 55.5 310 47.1
Gohir.D11G308300 Gossypium hirsutum HOM05D000071 ORTHO05D000029 8.7e-06 55.5 313 37.1
Gohir.D11G308466 Gossypium hirsutum HOM05D000071 ORTHO05D000029 8.7e-06 55.5 218 50.5
Gorai.007G280700 Gossypium raimondii HOM05D000071 ORTHO05D000029 8.7e-06 55.5 304 45.4
LjContig00564g0000068 Lotus japonicus HOM05D000071 ORTHO05D000029 8.7e-06 55.5 224 50.0
Medtr5g085970 Medicago truncatula HOM05D000071 ORTHO05D000029 8.7e-06 55.5 200 53.0
Prupe.1G100100 Prunus persica HOM05D000071 ORTHO05D000029 8.7e-06 55.5 220 50.5
Prupe.2G168700 Prunus persica HOM05D000071 ORTHO05D000029 8.7e-06 55.5 313 51.4
Prupe.2G169100 Prunus persica HOM05D000071 ORTHO05D000029 8.7e-06 55.5 226 50.9
TWI34G1669 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 8.7e-06 55.5 187 57.2
TAR128G0001 Trochodendron aralioides HOM05D000311 ORTHO05D000183 8.7e-06 55.5 190 57.4


User provided reference genes

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