Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.3e-91 339.7 171 100.0
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 1.8e-74 282.7 166 86.7
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 6.1e-70 267.7 166 84.3
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.3e-67 260.0 134 98.5
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.3e-64 250.0 161 80.7
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.7e-64 249.6 166 80.1
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 8.3e-59 230.7 168 70.8
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 4.1e-58 228.4 167 71.3
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 5.4e-58 228.0 158 72.2
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 5.4e-58 228.0 163 70.6
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.7e-56 223.0 167 70.1
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.3e-56 222.6 169 68.6
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 8.6e-56 220.7 167 67.7
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 1.2e-54 216.9 167 69.5
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.6e-54 216.5 167 69.5
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 2.8e-54 215.7 169 68.0
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 6.2e-54 214.5 167 67.1
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 8.1e-54 214.2 162 69.1
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 2.3e-53 212.6 166 68.7
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 8.9e-53 210.7 168 67.9
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 8.9e-53 210.7 168 67.9
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.2e-52 210.3 167 68.9
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.2e-52 210.3 167 68.9
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.2e-52 210.3 168 64.9
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.2e-52 210.3 167 65.3
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.5e-52 209.9 168 63.1
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 3.4e-52 208.8 168 65.5
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 4.4e-52 208.4 168 64.3
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 4.4e-52 208.4 167 68.3
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 5.8e-52 208.0 167 67.1
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 2.2e-51 206.1 173 62.4
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 2.2e-51 206.1 167 65.3
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.9e-51 205.7 167 65.9
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 2.9e-51 205.7 168 64.9
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 6.4e-51 204.5 168 67.9
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 8.3e-51 204.1 167 65.3
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 8.3e-51 204.1 166 65.1
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.1e-50 203.8 174 64.4
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.4e-50 203.4 171 62.0
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.4e-50 203.4 144 73.6
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.4e-50 203.4 144 73.6
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.4e-50 203.4 165 64.8
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.9e-50 203.0 166 63.9
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 2.4e-50 202.6 105 90.5
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 5.4e-50 201.4 172 63.4
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 7.1e-50 201.1 177 62.1
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 7.1e-50 201.1 167 64.1
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.1e-50 201.1 162 67.9
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 7.1e-50 201.1 144 71.5
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 7.1e-50 201.1 146 69.9
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 9.2e-50 200.7 169 63.9
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.2e-49 200.3 171 64.3
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.2e-49 200.3 160 64.4
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 3.5e-49 198.7 170 62.9
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 3.5e-49 198.7 169 63.3
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 6.0e-49 198.0 167 64.1
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 6.0e-49 198.0 162 65.4
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 7.8e-49 197.6 172 62.8
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.0e-48 197.2 160 63.8
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.0e-48 197.2 162 64.8
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.0e-48 197.2 177 62.1
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.7e-48 196.4 167 60.5
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.7e-48 196.4 164 62.2
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 3.0e-48 195.7 166 62.0
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 3.0e-48 195.7 105 87.6
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 5.1e-48 194.9 164 65.9
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 6.6e-48 194.5 165 65.5
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 2.5e-47 192.6 176 60.8
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 3.3e-47 192.2 174 61.5
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 4.3e-47 191.8 138 71.0
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 7.3e-47 191.0 143 69.9
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 7.3e-47 191.0 160 63.8
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 9.6e-47 190.7 160 61.2
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.6e-46 189.9 201 55.7
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.6e-46 189.9 154 63.0
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.8e-46 189.1 140 67.9
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.8e-46 189.1 155 67.1
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 2.8e-46 189.1 160 65.0
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 3.6e-46 188.7 105 83.8
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 3.6e-46 188.7 159 64.8
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 4.7e-46 188.3 159 64.8
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.1e-45 187.2 145 66.9
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 1.4e-45 186.8 134 76.9
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.4e-45 186.8 105 82.9
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.8e-45 186.4 105 82.9
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.8e-45 186.4 162 63.0
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.4e-45 186.0 160 63.8
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 3.1e-45 185.7 105 84.8
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 4.0e-45 185.3 130 69.2
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 4.0e-45 185.3 146 61.6
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 4.0e-45 185.3 157 62.4
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 4.0e-45 185.3 105 81.9
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 5.2e-45 184.9 157 65.0
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 5.2e-45 184.9 213 50.7
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 5.2e-45 184.9 155 65.8
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 5.2e-45 184.9 155 65.8
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 8.9e-45 184.1 103 83.5
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 8.9e-45 184.1 103 82.5
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 8.9e-45 184.1 129 71.3
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 8.9e-45 184.1 129 71.3
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.5e-44 183.3 140 65.0
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 1.5e-44 183.3 137 68.6
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 2.0e-44 183.0 105 79.0
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 2.0e-44 183.0 174 55.7
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 2.6e-44 182.6 105 82.9
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 3.4e-44 182.2 105 81.0
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 4.4e-44 181.8 103 80.6
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 5.8e-44 181.4 105 78.1
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 5.8e-44 181.4 105 79.0
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 5.8e-44 181.4 105 81.9
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 7.6e-44 181.0 133 66.2
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 7.6e-44 181.0 136 66.9
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 9.9e-44 180.6 103 79.6
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 9.9e-44 180.6 105 81.9
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 1.7e-43 179.9 145 61.4
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.2e-43 179.5 105 81.0
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 3.8e-43 178.7 171 57.3
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 6.4e-43 177.9 104 80.8
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 6.4e-43 177.9 167 58.7
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 8.4e-43 177.6 105 80.0
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.4e-42 176.8 105 80.0
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.9e-42 176.4 106 81.1
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 2.4e-42 176.0 155 63.2
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.2e-42 175.3 105 81.0
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 9.3e-42 174.1 204 51.0
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.2e-41 173.7 158 59.5
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 2.1e-41 172.9 148 62.2
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-41 172.9 105 81.0
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.3e-40 170.2 105 74.3
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-40 169.9 154 57.8
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 5.1e-40 168.3 89 88.8
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 6.6e-40 167.9 104 77.9
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 1.1e-39 167.2 104 78.8
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.9e-39 166.4 99 82.8
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 5.6e-39 164.9 142 62.0
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 9.6e-39 164.1 100 80.0
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 1.3e-38 163.7 105 76.2
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.8e-38 162.5 134 62.7
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.8e-38 162.5 112 67.9
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.4e-37 159.5 179 51.4
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 6.4e-35 151.4 106 74.5
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.4e-34 150.2 89 77.5
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.6e-33 146.7 82 84.1
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.7e-32 143.3 143 53.1
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.7e-32 143.3 166 52.4
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 2.5e-31 139.4 132 62.9
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 4.3e-31 138.7 107 61.7
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.6e-30 136.7 75 88.0
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 4.8e-30 135.2 106 60.4
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 4.0e-29 132.1 70 85.7
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 6.9e-29 131.3 96 69.8
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 2.5e-23 112.8 73 78.1
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.5e-20 103.6 58 77.6
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.1e-18 97.4 56 78.6
Sopen04g030320 Solanum pennellii HOM05D004280 ORTHO05D005059 1.2e-17 94.0 52 94.2
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.6e-17 93.6 61 67.2
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 1.0e-16 90.9 60 75.0
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 2.3e-16 89.7 108 40.7
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 1.6e-14 83.6 82 57.3
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 9.0e-13 77.8 111 36.9
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.0e-11 74.3 49 73.5
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 1.2e-09 67.4 76 55.3
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 4.6e-09 65.5 142 28.9
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 3.0e-08 62.8 33 84.8


User provided reference genes

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