Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 0.0e+00 1165.6 602 100.0
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 0.0e+00 1120.9 594 96.8
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 7.5e-288 993.4 623 84.1
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.8e-281 972.2 706 75.4
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.2e-280 969.5 706 75.5
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 1.5e-280 969.1 610 84.6
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 3.9e-260 901.4 609 80.0
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 3.9e-212 741.9 624 65.5
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 3.8e-207 725.3 623 65.5
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 2.0e-200 703.0 609 62.9
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 5.5e-198 694.9 610 62.5
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.8e-196 689.9 610 61.8
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 9.7e-195 684.1 641 61.2
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 1.3e-194 683.7 604 61.3
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.2e-194 682.9 652 60.4
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.8e-194 682.6 604 60.9
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 1.1e-193 680.6 607 61.1
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.8e-193 679.9 604 60.6
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 2.0e-192 676.4 619 62.7
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 2.1e-189 666.4 613 60.4
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 2.4e-185 652.9 622 60.1
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 7.0e-185 651.4 621 57.5
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 6.5e-183 644.8 621 60.1
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 9.4e-182 641.0 619 59.1
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 2.7e-181 639.4 636 57.4
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 6.1e-181 638.3 605 58.5
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 2.3e-180 636.3 610 58.4
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.1e-179 634.0 621 58.5
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 4.4e-179 632.1 621 58.6
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 9.7e-179 630.9 621 58.3
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 9.7e-179 630.9 625 57.9
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.3e-178 630.6 618 58.3
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 4.5e-176 622.1 620 57.1
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 5.9e-176 621.7 621 58.0
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 7.2e-174 614.8 611 56.0
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 3.0e-172 609.4 691 52.7
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 3.4e-171 605.9 609 57.5
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 5.7e-171 605.1 514 66.0
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 1.7e-170 603.6 627 55.5
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 1.4e-169 600.5 638 56.3
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 5.4e-169 598.6 570 60.9
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.5e-168 595.5 609 57.3
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 7.7e-168 594.7 609 56.7
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.1e-166 590.9 613 57.1
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 2.5e-166 589.7 621 54.9
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.2e-165 587.4 570 58.1
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.6e-165 587.0 637 54.5
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 1.8e-164 583.6 626 56.5
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.3e-162 577.4 588 57.0
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 7.0e-161 571.6 624 53.7
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 7.7e-160 568.2 586 55.8
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 2.9e-159 566.2 574 58.9
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 8.6e-159 564.7 607 54.0
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 2.1e-157 560.1 620 54.5
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 2.1e-157 560.1 623 53.3
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 3.4e-155 552.7 648 52.2
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 1.3e-154 550.8 628 52.5
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 6.4e-154 548.5 611 53.2
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 2.4e-153 546.6 621 52.8
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 9.2e-153 544.7 623 52.2
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 2.0e-152 543.5 628 53.5
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 5.0e-151 538.9 624 51.6
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 2.5e-150 536.6 668 50.0
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 2.5e-150 536.6 668 50.0
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.2e-149 534.3 612 52.6
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 1.6e-149 533.9 622 52.4
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 8.0e-149 531.6 622 52.3
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 1.4e-148 530.8 644 50.8
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 6.8e-148 528.5 629 51.5
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 6.8e-148 528.5 609 51.7
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 2.0e-147 526.9 612 51.1
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 4.4e-147 525.8 626 50.8
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 4.4e-147 525.8 617 51.2
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.1e-145 521.2 623 50.6
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 2.4e-145 520.0 625 50.4
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 3.5e-144 516.2 626 49.8
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 1.7e-143 513.8 614 52.0
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 5.0e-143 512.3 585 52.1
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 3.3e-142 509.6 611 49.8
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 1.6e-141 507.3 633 51.2
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 3.4e-139 499.6 603 51.2
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 4.9e-138 495.7 479 57.0
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 2.1e-136 490.3 607 50.6
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 4.6e-136 489.2 623 48.3
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 4.6e-136 489.2 623 48.3
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.2e-133 481.1 605 50.2
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 8.1e-133 478.4 626 47.1
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 5.2e-132 475.7 626 47.0
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 7.1e-129 465.3 604 48.5
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.3e-127 461.1 642 47.2
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 2.5e-126 456.8 451 57.2
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 2.1e-125 453.8 628 47.6
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 2.4e-124 450.3 572 50.2
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 4.0e-124 449.5 618 47.6
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 7.6e-123 445.3 412 58.3
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.9e-121 440.7 610 48.0
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 4.8e-117 426.0 419 58.9
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 1.5e-115 421.0 608 47.2
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 7.9e-112 408.7 604 45.9
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.5e-107 394.4 360 59.2
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 2.0e-107 394.0 617 43.6
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 3.3e-102 376.7 652 42.8
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.1e-84 318.5 291 57.0
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 2.4e-84 317.4 545 39.4
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.8e-79 301.2 531 39.7
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.7e-72 277.3 240 67.1
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 5.2e-71 273.1 180 76.7
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 6.5e-58 229.6 468 37.6
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 3.0e-55 220.7 268 48.5
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 1.2e-51 208.8 543 32.2
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 2.8e-48 197.6 278 41.7
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.4e-47 195.3 127 78.7
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 7.5e-46 189.5 154 66.2
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 7.3e-41 172.9 124 68.5
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 6.8e-39 166.4 502 31.9
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.0e-38 164.9 286 47.2
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 5.0e-34 150.2 113 66.4
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.5e-33 148.7 140 62.1
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.8e-31 141.7 149 55.0
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.2e-30 139.0 102 67.6
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.7e-26 125.2 178 41.0
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.5e-25 122.1 635 26.3
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 2.5e-25 121.3 177 45.8
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 3.3e-25 120.9 589 25.0
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.1e-23 115.9 75 73.3
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 1.1e-23 115.9 581 23.2
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 4.4e-22 110.5 187 43.9
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 2.7e-19 101.3 109 49.5
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 8.6e-18 96.3 79 67.1
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.5e-17 94.7 50 90.0
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 4.3e-17 94.0 78 64.1
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 2.1e-16 91.7 138 39.1
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 4.0e-15 87.4 69 55.1
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 3.4e-14 84.3 158 41.8
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 7.1e-12 76.6 95 56.8
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 7.8e-11 73.2 171 39.2
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 2.5e-09 68.2 68 47.1


User provided reference genes

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