Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 3.1e-84 315.1 157 100.0
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 4.5e-75 284.6 164 88.4
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 7.6e-75 283.9 164 87.8
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 2.2e-74 282.3 164 87.2
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 2.2e-74 282.3 164 87.2
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 3.8e-74 281.6 164 86.0
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 8.4e-66 253.8 164 76.8
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 2.5e-65 252.3 164 76.8
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.5e-65 252.3 164 77.4
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.5e-65 252.3 164 77.4
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 7.1e-65 250.8 164 76.8
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 3.5e-64 248.4 164 75.6
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 1.0e-63 246.9 164 73.8
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 1.0e-63 246.9 164 74.4
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.8e-63 246.1 164 73.8
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.9e-63 245.0 164 74.4
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.9e-63 245.0 164 74.4
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 5.1e-63 244.6 164 75.0
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 5.7e-62 241.1 164 68.9
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 9.7e-62 240.4 164 72.0
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 2.1e-61 239.2 164 70.7
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 2.1e-61 239.2 164 72.0
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 2.8e-61 238.8 164 70.7
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 3.7e-61 238.4 164 72.0
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 3.7e-61 238.4 164 70.1
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 4.8e-61 238.0 164 72.0
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 4.8e-61 238.0 164 67.7
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 8.2e-61 237.3 164 69.5
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 73.2
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 3.1e-60 235.3 164 71.3
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 9.0e-60 233.8 164 70.7
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 68.9
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.0e-59 232.6 164 69.5
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 5.9e-59 231.1 164 68.3
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 1.0e-58 230.3 164 67.7
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 1.0e-58 230.3 164 68.9
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.3e-58 229.9 162 68.5
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 1.7e-58 229.6 164 67.7
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 1.7e-58 229.6 164 68.3
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 2.2e-58 229.2 152 69.1
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 2.2e-58 229.2 164 68.3
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 2.9e-58 228.8 164 67.7
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 3.8e-58 228.4 164 67.7
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 5.0e-58 228.0 164 67.7
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 5.0e-58 228.0 164 67.7
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 5.0e-58 228.0 164 68.3
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 6.5e-58 227.6 166 68.1
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 8.5e-58 227.3 164 65.2
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 8.5e-58 227.3 164 69.5
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 8.5e-58 227.3 164 67.1
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 8.5e-58 227.3 164 67.7
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 1.1e-57 226.9 164 65.9
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 1.4e-57 226.5 164 67.7
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 1.4e-57 226.5 164 66.5
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 1.4e-57 226.5 164 65.2
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 1.9e-57 226.1 164 65.9
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 1.9e-57 226.1 164 65.9
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 1.9e-57 226.1 164 65.9
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 2.5e-57 225.7 164 65.2
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 2.5e-57 225.7 164 65.9
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 2.5e-57 225.7 164 67.1
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 2.5e-57 225.7 166 66.9
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 2.5e-57 225.7 164 67.7
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 3.2e-57 225.3 164 67.1
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 3.2e-57 225.3 164 67.7
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 3.2e-57 225.3 164 69.5
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 5.5e-57 224.6 164 66.5
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 5.5e-57 224.6 164 66.5
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 7.2e-57 224.2 164 67.7
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 9.3e-57 223.8 164 65.2
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 9.3e-57 223.8 166 66.9
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 9.3e-57 223.8 164 65.2
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 1.2e-56 223.4 159 67.9
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 1.6e-56 223.0 164 65.2
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 1.6e-56 223.0 188 61.7
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 2.1e-56 222.6 164 65.2
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 2.7e-56 222.2 164 64.0
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 2.7e-56 222.2 164 67.7
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 3.6e-56 221.9 162 64.8
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 3.6e-56 221.9 164 64.0
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 6.1e-56 221.1 164 65.9
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 1.8e-55 219.5 164 62.8
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.8e-55 219.5 164 64.0
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 1.8e-55 219.5 164 65.2
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 2.3e-55 219.2 164 65.2
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 3.0e-55 218.8 164 63.4
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 3.0e-55 218.8 164 63.4
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 3.0e-55 218.8 164 72.0
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 6.7e-55 217.6 173 61.8
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 1.5e-54 216.5 164 63.4
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 1.5e-54 216.5 164 65.2
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 2.5e-54 215.7 159 67.9
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 2.5e-54 215.7 164 64.0
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 5.7e-54 214.5 164 62.8
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 9.7e-54 213.8 164 64.6
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 1.6e-53 213.0 185 58.4
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 1.6e-53 213.0 193 57.0
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 2.2e-53 212.6 164 61.6
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 1.1e-52 210.3 164 64.0
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 3.1e-52 208.8 164 61.6
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 1.5e-51 206.5 174 59.2
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 7.7e-51 204.1 164 63.4
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 1.0e-50 203.8 164 61.0
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 1.3e-50 203.4 191 53.9
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 2.9e-50 202.2 164 60.4
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.6e-48 194.9 162 57.4
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 3.0e-47 192.2 171 57.9
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 9.1e-44 180.6 164 52.4
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.0e-43 179.5 147 57.1
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.6e-43 179.1 170 54.7
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.6e-43 179.1 170 54.7
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 4.5e-43 178.3 135 63.7
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 4.7e-40 168.3 167 55.7
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 8.8e-39 164.1 98 86.7
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.1e-38 163.7 170 53.5
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 2.4e-36 156.0 221 43.4
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 1.0e-34 150.6 164 49.4
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 1.0e-34 150.6 168 45.8
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 1.9e-33 146.4 168 47.0
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 1.2e-32 143.7 91 82.4
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 4.7e-32 141.7 117 62.4
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.5e-30 136.7 161 47.8
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 3.7e-29 132.1 96 64.6
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 3.1e-28 129.0 122 48.4
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 6.5e-26 121.3 82 68.3
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 7.2e-25 117.9 92 65.2
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 7.2e-25 117.9 83 72.3
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 1.2e-24 117.1 82 72.0
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 6.1e-24 114.8 83 68.7
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 2.8e-21 105.9 98 58.2
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 4.8e-21 105.1 156 40.4
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 1.8e-20 103.2 69 68.1
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 1.1e-17 94.0 82 52.4
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 3.3e-17 92.4 66 66.7
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 1.8e-15 86.7 119 36.1
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 4.0e-15 85.5 57 59.6
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 9.8e-14 80.9 46 78.3
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 4.9e-13 78.6 47 72.3
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 1.1e-12 77.4 71 59.2
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 1.3e-10 70.5 46 65.2
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 5.0e-10 68.6 54 59.3
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 1.2e-08 63.9 46 65.2
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 4.7e-08 62.0 48 64.6
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 1.5e-06 57.0 32 78.1
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 7.5e-06 54.7 67 43.3


User provided reference genes

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