Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000117g0180 Nicotiana tabacum HOM05D003229 ORTHO05D003835 4.2e-91 337.8 149 100.0
Nitab4.5_0002595g0030 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.4e-86 322.8 149 96.0
Solyc01g056760.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 2.5e-59 232.3 150 72.0
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.9e-27 126.3 96 54.2
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.1e-26 122.9 96 53.1
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 6.2e-26 121.3 94 51.1
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 3.4e-24 115.5 87 54.0
AUR62036294 Chenopodium quinoa HOM05D003229 ORTHO05D003835 4.9e-23 111.7 96 46.9
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 6.4e-23 111.3 112 45.5
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 6.4e-23 111.3 70 60.0
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 1.1e-22 110.5 114 42.1
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 1.1e-22 110.5 93 49.5
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 3.2e-22 109.0 120 41.7
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 4.2e-22 108.6 94 50.0
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 7.1e-22 107.8 101 46.5
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.6e-21 106.7 94 46.8
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.6e-21 106.7 73 57.5
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.7e-21 105.9 79 57.0
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.7e-21 105.9 79 54.4
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 4.6e-21 105.1 133 39.8
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.3e-20 103.6 70 58.6
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.3e-20 103.6 73 58.9
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 1.7e-20 103.2 73 56.2
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 3.9e-20 102.1 113 39.8
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 5.1e-20 101.7 73 54.8
Hund15039 Selenicereus undatus HOM05D003229 ORTHO05D003835 6.6e-20 101.3 93 44.1
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 8.7e-20 100.9 115 40.0
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 1.1e-19 100.5 70 55.7
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 1.1e-19 100.5 70 55.7
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 2.5e-19 99.4 111 39.6
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 7.3e-19 97.8 95 48.4
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 7.3e-19 97.8 97 45.4
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 7.3e-19 97.8 65 56.9
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 1.3e-18 97.1 73 50.7
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 1.6e-18 96.7 72 52.8
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 6.2e-18 94.7 96 47.9
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 1.1e-17 94.0 85 45.9
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 1.1e-17 94.0 98 42.9
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 1.4e-17 93.6 73 54.8
MBI05_g37661_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.4e-17 93.6 73 52.1
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 1.4e-17 93.6 69 53.6
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 1.4e-17 93.6 70 54.3
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 3.1e-17 92.4 73 54.8
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 4.0e-17 92.0 109 39.4
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 4.0e-17 92.0 72 51.4
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 5.3e-17 91.7 65 56.9
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 5.3e-17 91.7 65 56.9
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 6.9e-17 91.3 65 56.9
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 6.9e-17 91.3 65 56.9
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 6.9e-17 91.3 65 56.9
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 6.9e-17 91.3 70 55.7
AUR62038407 Chenopodium quinoa HOM05D003229 ORTHO05D003835 6.9e-17 91.3 96 41.7
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 6.9e-17 91.3 65 56.9
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 6.9e-17 91.3 104 39.4
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 6.9e-17 91.3 65 56.9
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 9.0e-17 90.9 65 56.9
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.2e-16 90.5 65 56.9
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.2e-16 90.5 121 34.7
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 1.5e-16 90.1 113 37.2
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.5e-16 90.1 81 48.1
A03p27320 Brassica napus HOM05D003229 ORTHO05D003835 2.0e-16 89.7 96 40.6
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 2.0e-16 89.7 96 40.6
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 2.0e-16 89.7 96 40.6
BraA03t11943Z Brassica rapa HOM05D003229 ORTHO05D003835 2.0e-16 89.7 96 40.6
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 2.6e-16 89.4 65 53.8
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 2.6e-16 89.4 98 40.8
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 2.6e-16 89.4 96 43.8
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 2.6e-16 89.4 91 42.9
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 4.5e-16 88.6 105 45.7
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 4.5e-16 88.6 82 45.1
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 7.6e-16 87.8 80 45.0
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 7.6e-16 87.8 69 52.2
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 9.9e-16 87.4 82 48.8
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 9.9e-16 87.4 65 55.4
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 1.3e-15 87.0 70 50.0
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 2.2e-15 86.3 65 53.8
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 2.9e-15 85.9 113 34.5
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 3.8e-15 85.5 127 33.9
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 8.4e-15 84.3 65 49.2
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 8.4e-15 84.3 91 41.8
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 8.4e-15 84.3 113 38.1
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 8.4e-15 84.3 111 36.9
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 8.4e-15 84.3 111 36.9
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 8.4e-15 84.3 68 52.9
Thhalv10002930m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.1e-14 84.0 112 36.6
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.1e-14 84.0 111 36.9
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.1e-14 84.0 74 45.9
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 1.1e-14 84.0 134 35.1
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 1.4e-14 83.6 98 40.8
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 1.4e-14 83.6 111 33.3
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 1.4e-14 83.6 111 33.3
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 1.9e-14 83.2 69 46.4
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 3.2e-14 82.4 54 55.6
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 3.2e-14 82.4 114 36.8
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 4.2e-14 82.0 86 40.7
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 4.2e-14 82.0 78 46.2
Sopen01g025300 Solanum pennellii HOM05D003229 ORTHO05D003835 4.2e-14 82.0 61 70.5
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.4e-14 81.6 47 66.0
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 5.4e-14 81.6 89 39.3
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 7.1e-14 81.3 65 53.8
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 9.3e-14 80.9 76 44.7
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 1.2e-13 80.5 115 35.7
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 1.2e-13 80.5 114 36.0
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 1.2e-13 80.5 114 36.0
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 1.6e-13 80.1 69 47.8
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 1.6e-13 80.1 73 42.5
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 2.1e-13 79.7 104 36.5
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 2.7e-13 79.3 94 37.2
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 2.7e-13 79.3 63 49.2
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.5e-13 79.0 117 34.2
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 3.5e-13 79.0 117 34.2
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 3.5e-13 79.0 52 57.7
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 3.5e-13 79.0 74 52.7
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 4.6e-13 78.6 94 38.3
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 6.0e-13 78.2 52 57.7
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 7.9e-13 77.8 127 30.7
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 7.9e-13 77.8 88 39.8
Thhalv10023543m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 7.9e-13 77.8 70 44.3
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 7.9e-13 77.8 63 50.8
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 1.3e-12 77.0 115 34.8
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 1.3e-12 77.0 115 34.8
Oeu047795.1 Olea europaea HOM05D003229 ORTHO05D003835 1.3e-12 77.0 55 56.4
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 1.3e-12 77.0 51 56.9
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.3e-12 77.0 52 55.8
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 1.8e-12 76.6 49 59.2
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 3.0e-12 75.9 98 36.7
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 3.0e-12 75.9 72 44.4
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 5.1e-12 75.1 45 62.2
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.5e-11 73.6 47 59.6
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 1.5e-11 73.6 77 41.6
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 1.9e-11 73.2 49 55.1
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.3e-11 72.4 69 47.8
AL7G45170 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 4.3e-11 72.0 87 40.2
SGA_v2.0_scaffold392G50668 Striga asiatica HOM05D003229 ORTHO05D003835 4.3e-11 72.0 120 33.3
Ah.12g059520 Amaranthus hybridus HOM05D003229 ORTHO05D003835 1.6e-10 70.1 96 35.4
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 1.1e-09 67.4 44 56.8
AT5G36240 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 1.2e-08 63.9 60 45.0
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 1.2e-08 63.9 97 34.0
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 1.2e-08 63.9 94 33.0
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 1.2e-08 63.9 44 59.1
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 1.5e-08 63.5 75 37.3
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 2.0e-08 63.2 84 34.5
CAN.G2071.4 Capsicum annuum HOM05D003229 ORTHO05D003835 3.4e-08 62.4 55 47.3
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 7.6e-08 61.2 42 54.8
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 7.6e-08 61.2 40 55.0
CAN.G10408.1 Capsicum annuum HOM05D003229 ORTHO05D003835 1.3e-07 60.5 58 46.6
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 6.4e-07 58.2 67 34.3
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 8.4e-07 57.8 116 31.0
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 8.4e-07 57.8 111 28.8
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.4e-06 57.0 91 35.2
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 1.4e-06 57.0 90 36.7
SGA_v2.0_scaffold41G15781 Striga asiatica HOM05D003229 ORTHO05D003835 1.9e-06 56.6 46 47.8
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 7.1e-06 54.7 73 31.5
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 9.3e-06 54.3 79 35.4


User provided reference genes

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