Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.0e-63 246.5 117 100.0
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.4e-49 199.5 117 83.8
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 1.8e-36 156.0 123 70.7
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.1e-33 146.7 126 63.5
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.0e-32 142.5 122 63.9
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-31 139.8 120 62.5
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 2.3e-31 139.0 125 60.0
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.9e-30 136.0 119 61.3
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.1e-29 131.0 121 62.8
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.0e-28 128.6 129 53.5
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.2e-27 126.7 116 60.3
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 1.2e-27 126.7 118 57.6
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.6e-27 125.6 130 53.1
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.6e-27 125.6 124 56.5
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 9.8e-27 123.6 133 51.1
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.9e-26 122.1 127 53.5
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.9e-26 121.3 126 52.4
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 8.3e-26 120.6 124 54.8
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 3.2e-25 118.6 124 50.0
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 7.0e-25 117.5 119 51.3
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.2e-24 116.7 124 50.8
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 4.6e-24 114.8 89 59.6
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 4.6e-24 114.8 89 59.6
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.3e-23 112.5 121 52.9
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 6.6e-23 110.9 123 51.2
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 8.6e-23 110.5 124 51.6
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 8.6e-23 110.5 118 50.8
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.1e-22 110.2 121 50.4
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.1e-22 110.2 125 48.8
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.5e-22 109.0 123 49.6
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 3.3e-22 108.6 124 48.4
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.3e-22 108.6 119 48.7
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 5.6e-22 107.8 125 47.2
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 7.3e-22 107.5 124 48.4
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 4.7e-21 104.8 126 46.8
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 8.0e-21 104.0 125 48.0
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 8.0e-21 104.0 127 47.2
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.1e-20 103.6 96 52.1
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.4e-20 103.2 121 47.1
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.8e-20 102.8 111 50.5
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 2.3e-20 102.4 117 47.0
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.0e-20 101.7 124 44.4
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 4.0e-20 101.7 128 44.5
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 5.2e-20 101.3 132 44.7
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.2e-19 100.1 124 40.3
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 1.2e-19 100.1 87 56.3
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 2.6e-19 99.0 118 46.6
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 2.6e-19 99.0 125 45.6
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.6e-19 99.0 125 46.4
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 2.6e-19 99.0 85 56.5
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.6e-19 99.0 117 43.6
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 3.4e-19 98.6 121 45.5
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 5.8e-19 97.8 127 44.1
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 7.5e-19 97.4 119 43.7
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 9.8e-19 97.1 133 43.6
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.3e-18 96.7 127 42.5
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.3e-18 96.7 124 40.3
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.3e-18 96.7 115 42.6
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.7e-18 96.3 83 56.6
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 2.2e-18 95.9 84 54.8
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 2.9e-18 95.5 123 41.5
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 2.9e-18 95.5 128 42.2
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 3.7e-18 95.1 126 42.1
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.9e-18 94.7 97 46.4
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.9e-18 94.7 97 46.4
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.9e-18 94.7 97 46.4
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.9e-18 94.7 97 46.4
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 4.9e-18 94.7 118 45.8
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 6.4e-18 94.4 127 46.5
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 6.4e-18 94.4 129 45.0
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 6.4e-18 94.4 119 44.5
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 8.3e-18 94.0 115 47.0
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 8.3e-18 94.0 126 45.2
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 8.3e-18 94.0 83 55.4
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.4e-17 93.2 117 44.4
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.4e-17 93.2 118 44.1
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.9e-17 92.8 122 43.4
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 3.2e-17 92.0 122 45.1
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 4.1e-17 91.7 122 43.4
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 7.0e-17 90.9 80 53.8
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 9.2e-17 90.5 118 44.9
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.6e-16 89.7 86 53.5
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 2.1e-16 89.4 125 40.0
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 3.5e-16 88.6 125 40.8
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.5e-16 88.6 117 42.7
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.6e-16 88.2 126 41.3
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 4.6e-16 88.2 128 43.0
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 6.0e-16 87.8 120 45.0
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.0e-16 87.8 128 43.0
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 7.8e-16 87.4 127 41.7
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-15 86.7 127 42.5
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-15 86.7 127 42.5
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 1.3e-15 86.7 122 43.4
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.7e-15 86.3 127 43.3
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.7e-15 86.3 82 47.6
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.3e-15 85.9 129 40.3
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 2.3e-15 85.9 122 42.6
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 2.3e-15 85.9 124 43.5
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 2.3e-15 85.9 127 38.6
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.9e-15 85.1 121 38.0
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 5.1e-15 84.7 118 39.8
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 6.6e-15 84.3 83 53.0
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 8.6e-15 84.0 133 37.6
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 8.6e-15 84.0 94 45.7
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.1e-14 83.6 128 39.8
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.1e-14 83.6 127 40.2
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.1e-14 83.6 128 39.1
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 1.5e-14 83.2 125 40.0
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 1.5e-14 83.2 125 40.8
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.9e-14 82.8 124 40.3
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.9e-14 82.8 124 39.5
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.9e-14 82.8 122 44.3
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.5e-14 82.4 131 38.2
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.5e-14 82.4 119 41.2
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 2.5e-14 82.4 124 39.5
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 2.5e-14 82.4 89 48.3
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.5e-14 82.4 103 41.7
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 3.3e-14 82.0 126 42.9
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.3e-14 82.0 93 41.9
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 3.3e-14 82.0 127 38.6
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 3.3e-14 82.0 90 45.6
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 4.3e-14 81.6 86 46.5
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 4.3e-14 81.6 128 39.1
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.3e-14 81.6 129 34.9
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 5.6e-14 81.3 116 41.4
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 7.3e-14 80.9 129 39.5
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 9.5e-14 80.5 116 39.7
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.2e-13 80.1 126 42.9
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.2e-13 80.1 87 46.0
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.2e-13 80.1 130 38.5
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 1.2e-13 80.1 129 41.1
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 1.6e-13 79.7 80 43.8
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.1e-13 79.3 118 39.8
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 2.1e-13 79.3 123 40.7
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.1e-13 79.3 84 50.0
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.6e-13 78.6 110 40.9
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 3.6e-13 78.6 121 37.2
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 4.7e-13 78.2 98 48.0
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 4.7e-13 78.2 118 39.8
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 4.7e-13 78.2 116 40.5
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 6.2e-13 77.8 118 39.8
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 6.2e-13 77.8 106 43.4
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 6.2e-13 77.8 106 43.4
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 6.2e-13 77.8 105 42.9
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 6.2e-13 77.8 131 38.9
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 8.1e-13 77.4 87 47.1
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 8.1e-13 77.4 85 47.1
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 8.1e-13 77.4 125 36.0
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.1e-12 77.0 112 42.0
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.1e-12 77.0 118 39.8
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 2.3e-12 75.9 118 41.5
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 3.1e-12 75.5 114 42.1
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 4.0e-12 75.1 119 42.0
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 6.8e-12 74.3 75 48.0
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 6.8e-12 74.3 75 48.0
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.2e-11 73.6 112 41.1
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 2.0e-11 72.8 88 43.2
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.6e-11 72.4 97 38.1
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.6e-11 72.4 116 42.2
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 3.4e-11 72.0 118 39.0
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 3.4e-11 72.0 118 39.0
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.4e-11 71.6 89 44.9
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 5.8e-11 71.2 118 37.3
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 5.8e-11 71.2 118 37.3
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 7.5e-11 70.9 94 40.4
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 9.9e-11 70.5 91 42.9
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.3e-10 70.1 118 37.3
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.9e-10 68.9 49 61.2
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 4.9e-10 68.2 93 41.9
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 8.3e-10 67.4 87 47.1
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 8.3e-10 67.4 80 40.0
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 3.2e-09 65.5 90 43.3
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 3.2e-09 65.5 80 42.5
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 3.2e-09 65.5 127 33.9
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.1e-09 65.1 98 35.7
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 5.4e-09 64.7 95 36.8
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 5.4e-09 64.7 85 38.8
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 7.1e-09 64.3 96 41.7
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.1e-09 64.3 83 34.9
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.2e-08 63.5 70 44.3
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.7e-08 62.4 80 38.8
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.8e-08 60.8 95 37.9
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 7.8e-08 60.8 106 34.9
ECA232G3842 Erigeron canadensis HOM05D003592 ORTHO05D029303 1.7e-07 59.7 90 41.1
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.9e-07 58.5 124 37.1
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 6.6e-07 57.8 121 37.2


User provided reference genes

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