Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 4.7e-249 864.0 415 100.0
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.4e-229 798.5 458 86.0
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 5.8e-199 697.6 420 80.5
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 2.7e-196 688.7 420 79.5
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 1.3e-195 686.4 418 79.7
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 6.9e-176 620.9 365 80.8
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 7.2e-173 610.9 361 80.6
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 1.8e-136 490.0 433 56.4
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 5.9e-135 485.0 436 54.8
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 7.3e-133 478.0 435 54.7
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 1.0e-131 474.2 453 53.4
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 6.8e-131 471.5 456 53.3
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 5.8e-130 468.4 425 56.7
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 1.7e-126 456.8 459 51.2
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 5.6e-125 451.8 419 53.9
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.3e-123 446.4 457 50.5
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.0e-122 443.4 457 49.7
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 2.6e-122 443.0 451 51.7
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.4e-122 442.6 457 50.3
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 3.4e-122 442.6 452 50.0
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 4.4e-122 442.2 417 53.5
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 1.7e-121 440.3 430 53.3
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.7e-121 440.3 450 50.7
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 3.7e-121 439.1 413 52.1
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 4.9e-121 438.7 370 58.6
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 6.4e-121 438.3 457 49.9
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 6.4e-121 438.3 481 49.5
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 1.4e-120 437.2 464 50.2
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 4.1e-120 435.6 425 52.0
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 7.1e-120 434.9 453 49.7
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-119 434.1 453 49.4
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 2.1e-119 433.3 418 51.9
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 6.0e-119 431.8 460 49.3
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 1.3e-118 430.6 416 51.7
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 2.3e-118 429.9 443 51.2
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 3.0e-118 429.5 456 48.7
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 5.1e-118 428.7 438 51.1
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 1.9e-117 426.8 461 48.6
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.3e-117 426.0 419 50.8
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.3e-117 426.0 445 49.2
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 4.3e-117 425.6 450 48.9
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 5.6e-117 425.2 411 53.0
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 9.5e-117 424.5 419 49.6
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 9.5e-117 424.5 415 50.8
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 3.6e-116 422.5 455 50.3
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 3.6e-116 422.5 455 50.3
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 8.1e-116 421.4 438 50.2
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 8.1e-116 421.4 421 51.3
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 2.3e-115 419.9 456 47.1
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 2.0e-114 416.8 452 46.9
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 4.4e-114 415.6 451 49.0
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 5.8e-114 415.2 472 47.9
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 9.9e-114 414.5 433 50.6
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 1.9e-112 410.2 460 47.4
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 1.0e-110 404.4 414 53.1
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 2.3e-110 403.3 472 47.2
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 3.0e-110 402.9 412 49.5
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 1.1e-109 401.0 456 47.1
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.1e-109 401.0 456 46.7
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 9.6e-109 397.9 438 48.4
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 9.6e-109 397.9 438 48.4
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 2.1e-108 396.7 464 46.3
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 2.8e-108 396.4 414 48.6
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 1.1e-107 394.4 414 48.3
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 3.1e-107 392.9 438 48.2
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 6.9e-107 391.7 414 48.6
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 8.9e-107 391.3 462 45.5
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 8.9e-107 391.3 414 50.2
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 1.2e-106 391.0 411 47.7
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 1.2e-106 391.0 455 45.7
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 5.8e-106 388.7 424 48.1
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 7.6e-106 388.3 450 45.3
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.7e-105 387.1 421 48.5
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 7.1e-104 381.7 384 51.0
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 9.3e-104 381.3 354 52.5
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 4.6e-103 379.0 413 48.2
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 7.8e-103 378.3 331 54.7
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 3.9e-102 375.9 429 47.1
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 7.3e-101 371.7 344 53.5
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 7.3e-101 371.7 435 46.0
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.1e-99 367.9 331 53.2
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 6.9e-99 365.2 330 53.0
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 9.0e-99 364.8 425 46.6
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 7.1e-96 355.1 413 46.0
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 7.9e-95 351.7 416 44.7
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.0e-94 351.3 477 42.6
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 9.6e-93 344.7 422 45.3
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 9.6e-93 344.7 419 46.5
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 3.6e-92 342.8 420 44.3
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 2.4e-91 340.1 420 44.8
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 6.9e-91 338.6 424 46.2
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 2.6e-90 336.7 418 46.7
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 6.4e-89 332.0 420 46.0
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 1.4e-88 330.9 417 45.6
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 1.3e-86 324.3 420 42.9
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 1.6e-84 317.4 300 52.7
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.1e-84 317.0 439 42.1
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 1.7e-81 307.4 404 41.6
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 1.6e-79 300.8 507 37.1
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.3e-78 297.0 395 42.3
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 1.6e-76 290.8 424 43.2
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.8e-76 290.0 548 34.3
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 3.1e-75 286.6 342 45.6
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-74 284.6 424 40.8
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.9e-73 280.0 434 38.0
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 1.9e-72 277.3 297 49.5
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.8e-67 260.8 320 44.7
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 3.1e-67 260.0 321 45.8
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.5e-65 251.9 405 36.8
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.9e-64 250.8 433 34.2
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.7e-60 237.7 248 50.8
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 8.5e-57 225.3 491 31.8
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 3.3e-53 213.4 550 27.6
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 5.7e-53 212.6 319 38.2
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 1.5e-48 198.0 314 37.6
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 4.2e-48 196.4 499 29.3
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 4.2e-48 196.4 370 35.4
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 8.0e-47 192.2 247 42.9
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 3.0e-46 190.3 161 57.8
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 1.3e-41 174.9 178 50.6
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.9e-40 171.0 146 53.4
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-39 167.9 143 52.4
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 8.0e-39 165.6 157 51.0
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 8.0e-39 165.6 164 49.4
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 2.8e-31 140.6 179 41.9
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 4.4e-29 133.3 267 32.2
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 9.2e-27 125.6 235 33.2
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 1.6e-26 124.8 94 61.7
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 3.3e-24 117.1 100 55.0
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 3.0e-22 110.5 163 40.5
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 1.3e-12 78.6 59 59.3
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 2.4e-11 74.3 81 48.1
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 7.0e-11 72.8 52 57.7
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 3.9e-09 67.0 36 80.6
FvH4_7g33361 Fragaria vesca HOM05D006040 ORTHO05D007134 6.8e-06 56.2 76 40.8


User provided reference genes

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