Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.4e-137 493.0 639 100.0
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 2.3e-106 390.6 625 94.4
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 1.2e-78 298.5 594 90.4
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 2.5e-71 274.2 626 84.5
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.0e-64 252.3 631 68.8
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 5.5e-55 219.9 575 87.7
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 1.2e-41 175.6 226 75.7
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 8.5e-40 169.5 217 80.2
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 7.2e-39 166.4 209 79.4
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.0e-37 162.5 208 78.8
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 1.8e-34 151.8 208 77.4
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 3.1e-34 151.0 599 74.0
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 7.7e-33 146.4 209 73.7
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.0e-32 146.0 134 64.2
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 1.3e-32 145.6 209 73.7
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.3e-32 145.6 226 69.5
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 2.2e-32 144.8 209 73.7
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 5.0e-32 143.7 226 65.5
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 1.1e-31 142.5 202 72.3
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.2e-30 139.0 202 72.3
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 1.2e-30 139.0 209 69.9
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 1.2e-30 139.0 207 71.5
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 1.6e-30 138.7 226 66.4
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 2.1e-30 138.3 201 72.6
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 2.7e-30 137.9 202 75.7
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.7e-30 137.9 202 76.2
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 2.7e-30 137.9 210 76.7
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 3.6e-30 137.5 195 72.8
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.1e-30 136.7 202 74.8
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 6.1e-30 136.7 202 75.7
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 6.1e-30 136.7 209 74.2
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 1.0e-29 136.0 202 74.8
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.4e-29 135.6 202 75.2
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.8e-29 135.2 226 66.4
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 1.8e-29 135.2 226 66.4
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.8e-29 135.2 223 69.5
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 2.3e-29 134.8 206 70.4
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 5.2e-29 133.7 207 71.5
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 5.2e-29 133.7 222 68.0
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.8e-29 133.3 186 74.7
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.8e-29 133.3 186 74.7
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 6.8e-29 133.3 222 64.0
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 8.8e-29 132.9 176 83.5
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 1.2e-28 132.5 207 70.0
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 1.2e-28 132.5 187 76.5
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 1.5e-28 132.1 165 80.0
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 2.0e-28 131.7 186 74.2
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 2.0e-28 131.7 206 69.4
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 2.6e-28 131.3 222 68.0
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 2.6e-28 131.3 226 60.6
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 3.4e-28 131.0 208 70.2
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 3.4e-28 131.0 209 72.2
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 4.4e-28 130.6 217 65.0
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 5.7e-28 130.2 191 71.2
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 5.7e-28 130.2 213 74.6
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 9.8e-28 129.4 194 74.7
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 3.7e-27 127.5 195 70.8
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 6.3e-27 126.7 189 73.5
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 6.3e-27 126.7 228 64.0
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 8.3e-27 126.3 209 69.9
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 8.3e-27 126.3 209 68.4
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 1.1e-26 125.9 213 48.4
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.1e-26 125.9 186 73.1
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 1.1e-26 125.9 187 70.1
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.4e-26 125.6 207 68.6
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 1.8e-26 125.2 189 47.1
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 2.4e-26 124.8 203 68.5
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 4.1e-26 124.0 202 72.3
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 7.0e-26 123.2 213 62.9
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 1.6e-25 122.1 202 73.3
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 2.0e-25 121.7 210 71.4
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.0e-25 121.7 210 71.4
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 2.7e-25 121.3 214 34.1
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 2.7e-25 121.3 165 80.6
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 3.5e-25 120.9 195 37.4
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 4.5e-25 120.6 190 75.3
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 5.9e-25 120.2 209 71.3
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 7.7e-25 119.8 207 71.0
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 1.3e-24 119.0 209 68.9
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.9e-24 117.9 201 72.6
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 2.9e-24 117.9 213 49.8
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 3.8e-24 117.5 201 72.1
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 6.5e-24 116.7 90 66.7
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 8.6e-24 116.3 225 60.0
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 8.6e-24 116.3 197 69.5
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 1.1e-23 115.9 211 59.7
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.9e-23 115.2 190 67.9
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 1.9e-23 115.2 199 34.7
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 3.3e-23 114.4 226 65.0
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 3.3e-23 114.4 226 65.0
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 4.2e-23 114.0 188 70.2
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 7.2e-23 113.2 210 71.4
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 9.5e-23 112.8 188 69.7
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 9.5e-23 112.8 190 65.3
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 9.5e-23 112.8 194 67.5
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 2.1e-22 111.7 186 66.1
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 3.6e-22 110.9 216 58.8
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 3.6e-22 110.9 209 63.2
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 4.7e-22 110.5 216 58.8
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 4.7e-22 110.5 189 69.3
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 6.1e-22 110.2 188 69.1
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 8.0e-22 109.8 205 61.0
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 8.0e-22 109.8 211 63.0
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 1.0e-21 109.4 188 69.1
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 1.4e-21 109.0 205 61.0
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 1.4e-21 109.0 205 61.0
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 1.8e-21 108.6 201 59.2
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 1.8e-21 108.6 190 47.4
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 1.8e-21 108.6 192 35.4
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 3.0e-21 107.8 211 63.5
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 3.0e-21 107.8 211 63.5
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 3.0e-21 107.8 199 40.7
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 5.2e-21 107.1 213 67.1
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 6.8e-21 106.7 195 67.7
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 6.8e-21 106.7 203 64.5
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 8.9e-21 106.3 235 37.0
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 8.9e-21 106.3 166 79.5
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 1.2e-20 105.9 211 63.0
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 1.2e-20 105.9 211 63.0
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.0e-20 105.1 195 70.3
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 3.4e-20 104.4 190 33.7
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 4.4e-20 104.0 100 58.0
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 4.4e-20 104.0 195 69.7
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 4.4e-20 104.0 97 55.7
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 4.4e-20 104.0 156 40.4
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 9.8e-20 102.8 181 66.3
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 9.8e-20 102.8 207 67.1
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 1.3e-19 102.4 78 66.7
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.2e-19 101.7 191 62.3
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 2.2e-19 101.7 86 59.3
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 2.8e-19 101.3 214 60.7
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 3.7e-19 100.9 207 63.3
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 4.9e-19 100.5 190 69.5
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 6.3e-19 100.1 187 67.4
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 6.3e-19 100.1 187 67.4
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 6.3e-19 100.1 78 62.8
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 8.3e-19 99.8 187 70.6
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 1.4e-18 99.0 165 77.0
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 1.4e-18 99.0 86 60.5
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 1.8e-18 98.6 204 31.9
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 1.8e-18 98.6 203 55.7
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 7.0e-18 96.7 216 59.7
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 7.0e-18 96.7 165 73.3
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 7.0e-18 96.7 76 63.2
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 1.2e-17 95.9 189 65.1
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 2.0e-17 95.1 184 44.6
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.0e-17 95.1 189 48.1
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 2.0e-17 95.1 98 51.0
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.7e-17 94.7 191 60.7
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 2.7e-17 94.7 211 28.9
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 3.5e-17 94.4 190 60.5
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 4.5e-17 94.0 189 49.2
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 7.8e-17 93.2 78 55.1
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 7.8e-17 93.2 235 59.1
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.0e-16 92.8 165 72.7
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 2.9e-16 91.3 211 30.3
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 3.8e-16 90.9 175 66.9
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 6.6e-16 90.1 209 64.1
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 8.6e-16 89.7 82 56.1
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 3.3e-15 87.8 195 63.6
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 3.3e-15 87.8 195 63.6
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 1.2e-14 85.9 76 57.9
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 2.8e-14 84.7 216 53.7
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 3.6e-14 84.3 216 53.7
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 4.7e-14 84.0 216 54.2
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 1.8e-13 82.0 190 59.5
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 2.3e-13 81.6 167 30.5
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 1.2e-12 79.3 160 34.4
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 4.4e-12 77.4 45 73.3
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 5.8e-12 77.0 89 49.4
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 9.8e-12 76.3 44 72.7
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 1.3e-11 75.9 137 39.4
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 1.7e-11 75.5 76 52.6
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 3.2e-10 71.2 45 68.9
EL10Ac8g18472 Beta vulgaris HOM05D003689 ORTHO05D003950 7.0e-10 70.1 42 78.6
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 7.0e-10 70.1 70 50.0
MD02G1045100 Malus domestica HOM05D003689 ORTHO05D003950 2.7e-09 68.2 43 69.8
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 2.7e-09 68.2 64 46.9
FAN23G2385 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.6e-08 63.5 136 33.1
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 2.5e-07 61.6 41 63.4
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 3.6e-06 57.8 68 41.2


User provided reference genes

Program Settings