Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000110g0670 Nicotiana tabacum HOM05D000020 ORTHO05D282261 8.2e-34 146.7 89 100.0
Nitab4.5_0009150g0010 Nicotiana tabacum HOM05D000020 ORTHO05D003131 1.2e-21 106.3 67 86.6
Manes.05G160600 Manihot esculenta HOM05D000020 ORTHO05D003131 1.2e-11 73.2 70 58.6
Potri.004G153800 Populus trichocarpa HOM05D000020 ORTHO05D003131 1.5e-11 72.8 98 45.9
PGR083G2037 Punica granatum HOM05D000020 ORTHO05D003131 2.0e-11 72.4 96 44.8
Potri.002G261800 Populus trichocarpa HOM05D000020 ORTHO05D003131 2.6e-11 72.0 70 57.1
Gohir.A09G075800 Gossypium hirsutum HOM05D000020 ORTHO05D003131 9.8e-11 70.1 70 55.7
Gorai.005G243100 Gossypium raimondii HOM05D000020 ORTHO05D003131 1.3e-10 69.7 70 55.7
Gohir.D02G215200 Gossypium hirsutum HOM05D000020 ORTHO05D003131 1.7e-10 69.3 70 54.3
Hma1.2p1_0203F.1_g086410 Hydrangea macrophylla HOM05D000020 ORTHO05D003131 1.7e-10 69.3 98 42.9
GSVIVG01031959001 Vitis vinifera HOM05D000020 ORTHO05D003131 1.7e-10 69.3 96 45.8
Duzib132G0153 Durio zibethinus HOM05D000020 ORTHO05D003131 4.9e-10 67.8 70 54.3
Glyma.06G012900 Glycine max HOM05D000020 ORTHO05D003131 4.9e-10 67.8 70 57.1
TWI31G0764 Tripterygium wilfordii HOM05D000020 ORTHO05D003131 4.9e-10 67.8 92 45.7
arahy.Tifrunner.gnm1.ann1.FNWQ0F Arachis hypogaea HOM05D000020 ORTHO05D003131 6.3e-10 67.4 99 43.4
arahy.Tifrunner.gnm1.ann1.T8JSGA Arachis hypogaea HOM05D000020 ORTHO05D003131 6.3e-10 67.4 99 43.4
DCAR_008760 Daucus carota HOM05D000020 ORTHO05D003131 6.3e-10 67.4 67 52.2
Eucgr.G00445 Eucalyptus grandis HOM05D000020 ORTHO05D003131 6.3e-10 67.4 96 47.9
Gohir.D09G075500 Gossypium hirsutum HOM05D000020 ORTHO05D003131 6.3e-10 67.4 70 54.3
Gorai.006G090600 Gossypium raimondii HOM05D000020 ORTHO05D003131 6.3e-10 67.4 70 54.3
Nn5g29578 Nelumbo nucifera HOM05D000020 ORTHO05D003131 6.3e-10 67.4 70 51.4
Rhsim07G0238100 Rhododendron simsii HOM05D000020 ORTHO05D003131 6.3e-10 67.4 94 45.7
CSS0041190 Camellia sinensis var. sinensis HOM05D000020 ORTHO05D003131 8.3e-10 67.0 68 51.5
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 8.3e-10 67.0 70 52.9
Glyma.04G013000 Glycine max HOM05D000020 ORTHO05D003131 8.3e-10 67.0 70 54.3
TAR381G1496 Trochodendron aralioides HOM05D000020 ORTHO05D003131 8.3e-10 67.0 70 51.4
TAR628G1716 Trochodendron aralioides HOM05D000020 ORTHO05D003131 8.3e-10 67.0 67 55.2
Cc10_g02950 Coffea canephora HOM05D000020 ORTHO05D003131 1.1e-09 66.6 96 47.9
GSVIVG01009700001 Vitis vinifera HOM05D000020 ORTHO05D003131 1.1e-09 66.6 96 43.8
Actinidia38009 Actinidia chinensis HOM05D000020 ORTHO05D003131 1.4e-09 66.2 71 50.7
Cfa005009 Carpinus fangiana HOM05D000020 ORTHO05D003131 1.4e-09 66.2 70 52.9
Cfa018146 Carpinus fangiana HOM05D000020 ORTHO05D003131 1.4e-09 66.2 107 52.3
COL.COLO4_25923 Corchorus olitorius HOM05D003525 ORTHO05D004578 1.4e-09 66.2 70 51.4
Eucgr.F01563 Eucalyptus grandis HOM05D000020 ORTHO05D003131 1.4e-09 66.2 67 50.7
MBI16_g31218_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D003131 1.4e-09 66.2 68 52.9
Oeu041649.1 Olea europaea HOM05D000020 ORTHO05D003131 1.4e-09 66.2 70 51.4
Duzib052G0288 Durio zibethinus HOM05D000020 ORTHO05D003131 1.8e-09 65.9 70 52.9
Duzib248G0512 Durio zibethinus HOM05D000020 ORTHO05D003131 1.8e-09 65.9 96 44.8
Actinidia17818 Actinidia chinensis HOM05D000020 ORTHO05D003131 2.4e-09 65.5 70 51.4
DCAR_019530 Daucus carota HOM05D000020 ORTHO05D003131 2.4e-09 65.5 67 56.7
Lj5C198G6 Lonicera japonica HOM05D000020 ORTHO05D003131 2.4e-09 65.5 64 57.8
Aqoxy6G01091 Aquilegia oxysepala HOM05D000020 ORTHO05D003131 3.1e-09 65.1 70 48.6
Gohir.A03G194100 Gossypium hirsutum HOM05D000020 ORTHO05D003131 3.1e-09 65.1 70 51.4
Phvul.009G024000 Phaseolus vulgaris HOM05D000020 ORTHO05D003131 3.1e-09 65.1 97 44.3
VMungo1309G2684 Vigna mungo HOM05D000020 ORTHO05D003131 3.1e-09 65.1 97 44.3
vmacro04523 Vaccinium macrocarpon HOM05D000020 ORTHO05D003131 4.1e-09 64.7 65 53.8
CSS0001780 Camellia sinensis var. sinensis HOM05D000020 ORTHO05D003131 5.4e-09 64.3 70 50.0
Lsat_1_v5_gn_5_118620 Lactuca sativa HOM05D003525 ORTHO05D004578 5.4e-09 64.3 90 45.6
Lalb_Chr08g0246631 Lupinus albus HOM05D000020 ORTHO05D003131 5.4e-09 64.3 97 44.3
Nn1g05021 Nelumbo nucifera HOM05D000020 ORTHO05D003131 5.4e-09 64.3 70 50.0
PSO675G6114 Papaver somniferum HOM05D000020 ORTHO05D003131 5.4e-09 64.3 71 52.1
Cpa.g.sc36.69 Carica papaya HOM05D000020 ORTHO05D003131 7.0e-09 63.9 96 41.7
ECA234G4515 Erigeron canadensis HOM05D000020 ORTHO05D003131 7.0e-09 63.9 64 54.7
HanXRQChr10g0307201 Helianthus annuus HOM05D000020 ORTHO05D003131 7.0e-09 63.9 64 54.7
PGR042G3507 Punica granatum HOM05D000020 ORTHO05D003131 7.0e-09 63.9 67 50.7
Thecc.08G025700 Theobroma cacao HOM05D000020 ORTHO05D003131 7.0e-09 63.9 93 40.9
TWI56G1103 Tripterygium wilfordii HOM05D000020 ORTHO05D003131 7.0e-09 63.9 63 54.0
CiPaw.05G063900 Carya illinoinensis HOM05D000020 ORTHO05D003131 9.2e-09 63.5 70 50.0
Ciclev10028372m.g Citrus clementina HOM05D000020 ORTHO05D003131 9.2e-09 63.5 70 50.0
Migut.C00717 Erythranthe guttata HOM05D000020 ORTHO05D003131 9.2e-09 63.5 70 50.0
MD15G1031700 Malus domestica HOM05D000020 ORTHO05D003131 9.2e-09 63.5 70 52.9
QL02p008456 Quercus lobata HOM05D000020 ORTHO05D003131 9.2e-09 63.5 70 50.0
Atru.chr5.3007 Acer truncatum HOM05D000020 ORTHO05D003131 1.2e-08 63.2 70 50.0
Actinidia27899 Actinidia chinensis HOM05D000020 ORTHO05D003131 1.2e-08 63.2 70 50.0
CSS0022837 Camellia sinensis var. sinensis HOM05D000020 ORTHO05D003131 1.2e-08 63.2 96 40.6
COL.COLO4_26327 Corchorus olitorius HOM05D000020 ORTHO05D003131 1.2e-08 63.2 67 50.7
Rhsim05G0074600 Rhododendron simsii HOM05D000020 ORTHO05D003131 1.2e-08 63.2 67 49.3
Thecc.02G086100 Theobroma cacao HOM05D000020 ORTHO05D003131 1.2e-08 63.2 67 52.2
ClCG05G019060 Citrullus lanatus HOM05D000020 ORTHO05D003131 1.6e-08 62.8 107 38.3
ClCG11G004460 Citrullus lanatus HOM05D000020 ORTHO05D003131 1.6e-08 62.8 68 51.5
Haze_17977 Corylus avellana HOM05D000020 ORTHO05D003131 1.6e-08 62.8 71 50.7
Solyc01g109570.4 Solanum lycopersicum HOM05D000020 ORTHO05D003131 1.6e-08 62.8 68 47.1
Sopen01g051760 Solanum pennellii HOM05D000020 ORTHO05D003131 1.6e-08 62.8 68 47.1
PGSC0003DMG402000722 Solanum tuberosum HOM05D000020 ORTHO05D003131 1.6e-08 62.8 68 47.1
CANSAT25G2896 Cannabis sativa HOM05D000020 ORTHO05D003131 2.0e-08 62.4 98 45.9
Haze_02379 Corylus avellana HOM05D000020 ORTHO05D003131 2.0e-08 62.4 67 52.2
PSO541G5636 Papaver somniferum HOM05D000020 ORTHO05D003131 2.0e-08 62.4 68 51.5
Prupe.1G380300 Prunus persica HOM05D000020 ORTHO05D003131 2.0e-08 62.4 68 51.5
Sed0019216 Sechium edule HOM05D000020 ORTHO05D003131 2.0e-08 62.4 70 50.0
MELO3C003846.2 Cucumis melo HOM05D000020 ORTHO05D003131 2.7e-08 62.0 68 50.0
CsaV3_3G045050 Cucumis sativus L. HOM05D000020 ORTHO05D003131 2.7e-08 62.0 68 50.0
Prupe.8G098000 Prunus persica HOM05D000020 ORTHO05D003131 2.7e-08 62.0 70 51.4
VMungo0647G1864 Vigna mungo HOM05D000020 ORTHO05D003131 2.7e-08 62.0 67 49.3
MELO3C020979.2 Cucumis melo HOM05D000020 ORTHO05D003131 3.5e-08 61.6 68 50.0
Glyma.14G075500 Glycine max HOM05D000020 ORTHO05D003131 3.5e-08 61.6 67 47.8
Sed0025795 Sechium edule HOM05D000020 ORTHO05D003131 3.5e-08 61.6 70 45.7
vmacro17496 Vaccinium macrocarpon HOM05D000020 ORTHO05D003131 3.5e-08 61.6 65 50.8
CsaV3_2G014660 Cucumis sativus L. HOM05D000020 ORTHO05D003131 4.5e-08 61.2 68 48.5
Peaxi162Scf00417g01021 Petunia axillaris HOM05D000020 ORTHO05D003131 4.5e-08 61.2 94 43.6
Hund00273 Selenicereus undatus HOM05D000020 ORTHO05D003131 4.5e-08 61.2 67 50.7
Actinidia29826 Actinidia chinensis HOM05D000020 ORTHO05D003131 5.9e-08 60.8 71 47.9
Duzib093G0182 Durio zibethinus HOM05D000020 ORTHO05D003131 5.9e-08 60.8 67 46.3
Lj4A41G54 Lonicera japonica HOM05D000020 ORTHO05D003131 5.9e-08 60.8 100 50.0
QL11p043447 Quercus lobata HOM05D000020 ORTHO05D003131 5.9e-08 60.8 67 49.3
Atru.chr13.491 Acer truncatum HOM05D001241 ORTHO05D003131 7.8e-08 60.5 67 50.7
MSTRG.20086 Avicennia marina HOM05D000020 ORTHO05D003131 7.8e-08 60.5 64 53.1
Lj5g0024777 Lotus japonicus HOM05D000020 ORTHO05D003131 7.8e-08 60.5 70 45.7
MD10G1077100 Malus domestica HOM05D000020 ORTHO05D003131 7.8e-08 60.5 67 50.7
Sabra04G0102200 Salix brachista HOM05D000020 ORTHO05D003131 7.8e-08 60.5 70 50.0
THA.LOC104798642 Tarenaya hassleriana HOM05D000020 ORTHO05D003131 7.8e-08 60.5 98 44.9
unitig_0.g847 Utricularia gibba HOM05D000020 ORTHO05D003131 7.8e-08 60.5 67 47.8
Medtr4g069940 Medicago truncatula HOM05D000020 ORTHO05D003131 1.0e-07 60.1 98 39.8
Nitab4.5_0000308g0030 Nicotiana tabacum HOM05D000020 ORTHO05D003131 1.0e-07 60.1 69 49.3
Nitab4.5_0004172g0060 Nicotiana tabacum HOM05D000020 ORTHO05D003131 1.0e-07 60.1 69 49.3
RcHm_v2.0_Chr6g0264131 Rosa chinensis HOM05D000020 ORTHO05D003131 1.0e-07 60.1 65 50.8
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 1.0e-07 60.1 100 42.0
Cpa.g.sc62.143 Carica papaya HOM05D000020 ORTHO05D003131 1.3e-07 59.7 71 46.5
Sed0027595 Sechium edule HOM05D000020 ORTHO05D003131 1.3e-07 59.7 68 50.0
CAN.G1412.1 Capsicum annuum HOM05D000020 ORTHO05D003131 1.7e-07 59.3 69 44.9
Lj1g0015156 Lotus japonicus HOM05D000020 ORTHO05D003131 1.7e-07 59.3 72 47.2
TWI36G0838 Tripterygium wilfordii HOM05D000020 ORTHO05D003131 1.7e-07 59.3 65 50.8
ATR0733G209 Amborella trichopoda HOM05D000020 ORTHO05D003131 2.3e-07 58.9 65 47.7
CDE07G1879 Ceratophyllum demersum HOM05D003525 ORTHO05D004578 2.3e-07 58.9 67 49.3
Peaxi162Scf00016g00836 Petunia axillaris HOM05D000020 ORTHO05D003131 2.3e-07 58.9 64 51.6
FvH4_2g08690 Fragaria vesca HOM05D000020 ORTHO05D003131 2.9e-07 58.5 67 47.8
FAN15G0558 Fragaria x ananassa HOM05D000020 ORTHO05D003131 2.9e-07 58.5 67 47.8
FAN24G3214 Fragaria x ananassa HOM05D000020 ORTHO05D003131 2.9e-07 58.5 67 47.8
FAN27G2111 Fragaria x ananassa HOM05D000020 ORTHO05D003131 2.9e-07 58.5 67 47.8
Psat5g006240 Pisum sativum HOM05D000020 ORTHO05D003131 2.9e-07 58.5 97 41.2
EL10Ac9g21729 Beta vulgaris HOM05D000020 ORTHO05D003131 3.9e-07 58.2 67 47.8
Duzib041G0485 Durio zibethinus HOM05D000020 ORTHO05D003131 3.9e-07 58.2 67 46.3
FAN20G1595 Fragaria x ananassa HOM05D000020 ORTHO05D003131 3.9e-07 58.2 67 47.8
Medtr3g116510 Medicago truncatula HOM05D000020 ORTHO05D003131 3.9e-07 58.2 99 41.4
Sabra09G0088600 Salix brachista HOM05D000020 ORTHO05D003131 3.9e-07 58.2 70 45.7
Sc14g0002100 Simmondsia chinensis HOM05D000020 ORTHO05D003131 5.0e-07 57.8 62 51.6
Ah.01g019420 Amaranthus hybridus HOM05D003525 ORTHO05D004578 6.6e-07 57.4 65 49.2
Medtr1g022160 Medicago truncatula HOM05D000020 ORTHO05D003131 6.6e-07 57.4 70 44.3
TPR.G20179 Trifolium pratense HOM05D000020 ORTHO05D003131 6.6e-07 57.4 70 44.3
Manes.17G100600 Manihot esculenta HOM05D000020 ORTHO05D003131 8.6e-07 57.0 68 47.1
DCAR_001581 Daucus carota HOM05D000020 ORTHO05D003131 1.1e-06 56.6 64 50.0
TPR.G19680 Trifolium pratense HOM05D000020 ORTHO05D003131 1.1e-06 56.6 98 36.7
TPR.G38128 Trifolium pratense HOM05D000020 ORTHO05D003131 1.1e-06 56.6 67 47.8
VMungo1127G0528 Vigna mungo HOM05D000020 ORTHO05D003131 1.5e-06 56.2 68 45.6
Phvul.011G045800 Phaseolus vulgaris HOM05D000020 ORTHO05D003131 1.9e-06 55.8 68 44.1
arahy.Tifrunner.gnm1.ann1.FFGR5Q Arachis hypogaea HOM05D000020 ORTHO05D001240 3.3e-06 55.1 93 34.4
arahy.Tifrunner.gnm1.ann1.GR30HE Arachis hypogaea HOM05D000020 ORTHO05D001240 3.3e-06 55.1 93 34.4
Gohir.A05G194700 Gossypium hirsutum HOM05D000020 ORTHO05D003131 3.3e-06 55.1 67 43.3
Gohir.D05G197900 Gossypium hirsutum HOM05D000020 ORTHO05D003131 3.3e-06 55.1 67 44.8
Gorai.009G202900 Gossypium raimondii HOM05D000020 ORTHO05D003131 3.3e-06 55.1 67 44.8
Potri.009G115400 Populus trichocarpa HOM05D000020 ORTHO05D003131 3.3e-06 55.1 94 38.3
Ah.01g006240 Amaranthus hybridus HOM05D000020 ORTHO05D003131 4.3e-06 54.7 70 45.7
Glyma.12G043800 Glycine max HOM05D000020 ORTHO05D003131 4.3e-06 54.7 93 35.5
RcHm_v2.0_Chr6g0300921 Rosa chinensis HOM05D000020 ORTHO05D003131 4.3e-06 54.7 68 45.6
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 5.6e-06 54.3 67 44.8
C07p60600 Brassica napus HOM05D003825 ORTHO05D004491 5.6e-06 54.3 67 44.8
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 5.6e-06 54.3 67 44.8
BraA03t15368Z Brassica rapa HOM05D003825 ORTHO05D004491 5.6e-06 54.3 67 44.8
THA.LOC104807321 Tarenaya hassleriana HOM05D000020 ORTHO05D003131 5.6e-06 54.3 70 42.9
CDE06G1352 Ceratophyllum demersum HOM05D000020 ORTHO05D003131 7.3e-06 53.9 67 44.8
AUR62011329 Chenopodium quinoa HOM05D000020 ORTHO05D003131 7.3e-06 53.9 67 44.8
SalBow6G1652 Salvia bowleyana HOM05D000020 ORTHO05D003131 7.3e-06 53.9 64 45.3
Lalb_Chr24g0398991 Lupinus albus HOM05D000020 ORTHO05D003131 9.5e-06 53.5 64 45.3
Oeu064378.1 Olea europaea HOM05D000020 ORTHO05D001617 9.5e-06 53.5 66 47.0
SEGI_28112 Sequoiadendron giganteum HOM05D000020 ORTHO05D001617 9.5e-06 53.5 64 46.9


User provided reference genes

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