Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 0.0e+00 1479.5 754 100.0
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 0.0e+00 1328.9 756 91.5
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 2.7e-287 991.9 754 71.8
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 5.9e-282 974.2 766 71.0
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 1.5e-256 889.8 696 70.8
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 8.9e-238 827.4 694 67.7
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 2.4e-118 430.6 794 40.1
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 8.6e-108 395.6 830 37.2
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 3.4e-104 383.6 786 37.8
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 1.7e-100 371.3 806 36.4
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 3.0e-100 370.5 806 36.4
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 8.1e-98 362.5 818 36.8
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 8.9e-97 359.0 784 36.1
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 2.7e-93 347.4 820 34.5
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 9.0e-89 332.4 778 35.1
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 6.4e-79 299.7 814 33.4
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 8.4e-79 299.3 845 32.2
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 5.4e-78 296.6 806 32.0
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 6.7e-76 289.7 777 32.9
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 2.1e-74 284.6 808 32.4
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 6.2e-74 283.1 904 31.3
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 3.4e-72 277.3 424 45.8
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 4.9e-71 273.5 892 30.9
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 1.2e-69 268.9 895 31.5
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 1.3e-68 265.4 768 33.9
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 1.8e-68 265.0 825 31.3
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 1.9e-67 261.5 886 30.0
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 4.8e-66 256.9 966 28.6
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 1.4e-62 245.4 921 30.3
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 1.9e-62 245.0 310 48.4
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 3.0e-60 237.7 876 29.8
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 5.1e-60 236.9 881 29.6
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 5.1e-60 236.9 282 49.6
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 6.7e-60 236.5 870 29.7
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 3.3e-59 234.2 235 57.0
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 5.7e-59 233.4 262 52.7
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 7.4e-59 233.0 841 30.0
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 4.8e-58 230.3 840 29.8
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 1.8e-57 228.4 811 30.2
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 2.4e-57 228.0 1011 27.9
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 1.2e-56 225.7 743 30.0
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 1.2e-56 225.7 813 30.9
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 2.0e-56 224.9 798 30.8
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 4.5e-56 223.8 848 29.5
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 1.7e-55 221.9 835 28.5
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 2.2e-55 221.5 821 29.8
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 2.9e-55 221.1 810 29.8
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 8.5e-55 219.5 833 28.5
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 3.2e-54 217.6 900 27.1
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 1.0e-52 212.6 773 29.6
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 2.3e-52 211.5 803 28.5
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 4.8e-50 203.8 767 28.4
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 4.1e-49 200.7 296 43.6
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 2.6e-48 198.0 528 33.5
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 4.5e-48 197.2 810 28.0
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 5.9e-48 196.8 939 26.9
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 3.8e-47 194.1 766 29.9
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 1.9e-46 191.8 764 27.4
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 3.2e-46 191.0 1002 26.5
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 3.2e-46 191.0 783 28.9
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 5.5e-46 190.3 790 27.8
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 3.6e-45 187.6 824 28.3
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 6.1e-45 186.8 813 27.3
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 7.9e-45 186.4 442 33.0
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 2.3e-44 184.9 768 26.8
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 5.1e-44 183.7 788 27.3
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 5.1e-44 183.7 760 27.8
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 2.0e-43 181.8 711 28.8
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 5.7e-43 180.3 309 37.5
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 1.3e-42 179.1 825 26.8
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 1.7e-42 178.7 768 27.6
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 2.2e-42 178.3 233 46.4
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 2.2e-42 178.3 766 27.0
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 3.7e-42 177.6 188 53.2
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 2.4e-41 174.9 291 41.6
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 5.9e-40 170.2 309 37.5
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 1.0e-39 169.5 819 27.0
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 1.3e-39 169.1 270 40.0
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 1.3e-39 169.1 842 27.0
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 1.7e-39 168.7 435 34.9
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 2.9e-39 167.9 315 36.5
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 3.8e-39 167.5 772 27.3
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 1.5e-38 165.6 779 25.4
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 3.2e-38 164.5 851 25.5
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 2.1e-37 161.8 880 26.1
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 3.6e-37 161.0 766 27.8
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 6.1e-37 160.2 875 25.6
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 6.7e-36 156.8 750 28.0
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 6.7e-36 156.8 925 24.5
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 3.3e-35 154.5 783 26.3
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 9.7e-35 152.9 829 25.6
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 9.7e-35 152.9 829 25.6
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 2.8e-34 151.4 817 24.8
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.4e-33 149.1 260 39.2
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 7.0e-33 146.7 424 32.5
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 7.0e-33 146.7 271 38.7
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 1.2e-32 146.0 364 32.7
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 1.2e-32 146.0 364 32.7
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 2.0e-32 145.2 307 37.8
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 4.5e-32 144.1 185 47.0
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 6.5e-31 140.2 374 33.4
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 3.6e-29 134.4 644 27.8
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 6.1e-29 133.7 339 34.2
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 2.3e-28 131.7 830 25.2
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 5.2e-28 130.6 487 29.0
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 6.8e-28 130.2 266 36.1
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 2.6e-27 128.3 530 28.9
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 2.8e-26 124.8 263 36.5
vmacro21630 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 4.8e-26 124.0 655 27.6
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 1.1e-25 122.9 227 37.9
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 3.1e-25 121.3 244 36.5
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 9.1e-25 119.8 223 38.1
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 6.5e-23 113.6 306 33.0
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 4.2e-22 110.9 134 47.8
TAR381G0602 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.8e-17 95.5 147 42.9
Atru.chr13.504 Acer truncatum HOM05D005945 ORTHO05D006749 7.3e-14 83.6 381 26.8
Sc18g0006320 Simmondsia chinensis HOM05D005945 ORTHO05D006749 2.2e-10 72.0 236 26.7
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 8.3e-10 70.1 257 28.4
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 1.1e-09 69.7 130 36.9
HPP92_021280 Vanilla planifolia HOM05D050438 ORTHO05D006749 2.7e-08 65.1 266 28.6
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 3.9e-07 61.2 143 32.2
MBI11_g07400_MAGBIO Magnolia biondii HOM05D007138 ORTHO05D009148 3.3e-06 58.2 173 31.8
Lj4P42T20 Lonicera japonica HOM05D005945 ORTHO05D006749 5.6e-06 57.4 378 25.7


User provided reference genes

Program Settings