Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000110g0010 Nicotiana tabacum HOM05D008210 ORTHO05D010078 5.5e-56 220.7 109 100.0
Sopen04g033260 Solanum pennellii HOM05D008210 ORTHO05D010078 4.0e-22 108.2 121 60.3
CAN.G371.108 Capsicum annuum HOM05D009591 ORTHO05D000101 2.1e-15 85.9 102 56.9
Lsat_1_v5_gn_1_19601 Lactuca sativa HOM05D008210 ORTHO05D010078 6.8e-14 80.9 107 41.1
Gorai.010G013900 Gossypium raimondii HOM05D008210 ORTHO05D010078 3.4e-13 78.6 86 46.5
COL.COLO4_26398 Corchorus olitorius HOM05D008210 ORTHO05D010078 5.8e-13 77.8 78 51.3
Atru.chr13.581 Acer truncatum HOM05D008210 ORTHO05D010078 9.8e-13 77.0 73 50.7
Thecc.08G019400 Theobroma cacao HOM05D008210 ORTHO05D010078 9.8e-13 77.0 71 56.3
EL10Ac8g19959 Beta vulgaris HOM05D008210 ORTHO05D010078 1.3e-12 76.6 97 42.3
SGA_v2.0_scaffold14G07009 Striga asiatica HOM05D008210 ORTHO05D010078 2.9e-12 75.5 113 44.2
Manes.05G166500 Manihot esculenta HOM05D008210 ORTHO05D010078 3.7e-12 75.1 82 50.0
Atru.chr13.582 Acer truncatum HOM05D008210 ORTHO05D010078 8.3e-12 73.9 73 47.9
MSTRG.22279 Avicennia marina HOM05D008210 ORTHO05D010078 1.4e-11 73.2 87 47.1
FAN15G3542 Fragaria x ananassa HOM05D008210 ORTHO05D010078 1.4e-11 73.2 85 48.2
Gohir.A06G013600 Gossypium hirsutum HOM05D008210 ORTHO05D010078 1.4e-11 73.2 107 40.2
Gohir.D06G011200 Gossypium hirsutum HOM05D008210 ORTHO05D010078 2.4e-11 72.4 87 42.5
Hma1.2p1_0023F.1_g015200 Hydrangea macrophylla HOM05D008210 ORTHO05D010078 2.4e-11 72.4 110 41.8
Ah.09g236870 Amaranthus hybridus HOM05D008210 ORTHO05D010078 4.1e-11 71.6 91 44.0
Ah.09g236890 Amaranthus hybridus HOM05D008210 ORTHO05D010078 4.1e-11 71.6 91 44.0
Haze_17600 Corylus avellana HOM05D008210 ORTHO05D010078 4.1e-11 71.6 107 41.1
Potri.002G130500 Populus trichocarpa HOM05D008210 ORTHO05D010078 4.1e-11 71.6 73 54.8
Sabra14G0027900 Salix brachista HOM05D008210 ORTHO05D010078 5.4e-11 71.2 97 43.3
VMungo1309G3066 Vigna mungo HOM05D008210 ORTHO05D010078 5.4e-11 71.2 94 47.9
Cfa018466 Carpinus fangiana HOM05D008210 ORTHO05D010078 9.2e-11 70.5 95 41.1
Potri.014G038500 Populus trichocarpa HOM05D008210 ORTHO05D010078 9.2e-11 70.5 73 53.4
Aqoxy2G03320 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 1.2e-10 70.1 73 49.3
Aqoxy6G00952 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 1.2e-10 70.1 73 49.3
FvH4_2g40530 Fragaria vesca HOM05D008210 ORTHO05D010078 1.2e-10 70.1 89 42.7
Cc10_g03600 Coffea canephora HOM05D008210 ORTHO05D010078 1.6e-10 69.7 107 40.2
Glyma.04G035200 Glycine max HOM05D008210 ORTHO05D010078 1.6e-10 69.7 96 46.9
Eucgr.F01503 Eucalyptus grandis HOM05D008210 ORTHO05D010078 2.0e-10 69.3 117 37.6
Rhsim06G0039800 Rhododendron simsii HOM05D008210 ORTHO05D010078 2.7e-10 68.9 110 43.6
Prupe.1G386500 Prunus persica HOM05D008210 ORTHO05D010078 3.5e-10 68.6 105 42.9
RcHm_v2.0_Chr6g0300191 Rosa chinensis HOM05D008210 ORTHO05D010078 3.5e-10 68.6 90 42.2
ECA247G0280 Erigeron canadensis HOM05D008210 ORTHO05D010078 6.0e-10 67.8 102 43.1
Lj1g0017592 Lotus japonicus HOM05D008210 ORTHO05D010078 6.0e-10 67.8 102 40.2
QL02p006968 Quercus lobata HOM05D008210 ORTHO05D010078 6.0e-10 67.8 84 44.0
TAR381G1599 Trochodendron aralioides HOM05D008210 ORTHO05D010078 6.0e-10 67.8 100 40.0
Cpa.g.sc64.23 Carica papaya HOM05D008210 ORTHO05D010078 1.0e-09 67.0 89 41.6
Phvul.009G061375 Phaseolus vulgaris HOM05D008210 ORTHO05D010078 1.0e-09 67.0 86 44.2
Psat0s3268g0120 Pisum sativum HOM05D008210 ORTHO05D010078 2.3e-09 65.9 90 46.7
SalBow8G0954 Salvia bowleyana HOM05D008210 ORTHO05D010078 3.0e-09 65.5 73 56.2
Dinv36022 Davidia involucrata HOM05D000260 ORTHO05D002276 6.6e-09 64.3 91 41.8
Medtr3g111460 Medicago truncatula HOM05D008210 ORTHO05D010078 8.6e-09 63.9 83 47.0
Ciclev10002912m.g Citrus clementina HOM05D008210 ORTHO05D010078 1.1e-08 63.5 96 41.7
Glyma.06G035100 Glycine max HOM05D008210 ORTHO05D010078 1.1e-08 63.5 101 41.6
Lalb_Chr08g0245741 Lupinus albus HOM05D008210 ORTHO05D010078 1.1e-08 63.5 77 44.2
CiPaw.15G068700 Carya illinoinensis HOM05D008210 ORTHO05D010078 1.9e-08 62.8 84 38.1
MBI16_g31333_MAGBIO Magnolia biondii HOM05D008210 ORTHO05D010078 3.3e-08 62.0 95 42.1
TPR.G12346 Trifolium pratense HOM05D008210 ORTHO05D010078 9.5e-08 60.5 84 46.4
Migut.N02682 Erythranthe guttata HOM05D008210 ORTHO05D010078 1.2e-07 60.1 43 62.8
Nn5g29422 Nelumbo nucifera HOM05D008210 ORTHO05D010078 1.2e-07 60.1 99 37.4
arahy.Tifrunner.gnm1.ann1.KBQ6U1 Arachis hypogaea HOM05D008210 ORTHO05D010078 1.6e-07 59.7 85 42.4
Sc02g0006720 Simmondsia chinensis HOM05D008210 ORTHO05D010078 2.8e-07 58.9 73 45.2
TAR628G0004 Trochodendron aralioides HOM05D008210 ORTHO05D010078 2.8e-07 58.9 85 43.5
Ca_15536_v3 Cicer arietinum L. HOM05D008210 ORTHO05D010078 3.6e-07 58.5 83 39.8
AL1G53960 Arabidopsis lyrata HOM05D015684 ORTHO05D010078 1.1e-06 57.0 54 48.1
Aqoxy6G00950 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 1.4e-06 56.6 45 55.6
MELO3C010908.2 Cucumis melo HOM05D022138 ORTHO05D010078 1.8e-06 56.2 93 39.8
CARHR037250 Cardamine hirsuta HOM05D015684 ORTHO05D010078 5.2e-06 54.7 76 38.2
GSVIVG01009614001 Vitis vinifera HOM05D008210 ORTHO05D010078 6.8e-06 54.3 73 45.2


User provided reference genes

Program Settings