Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 2912.9 1461 100.0
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2355.5 1580 77.7
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 2177.1 1580 72.8
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 2173.3 1580 72.8
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1981.8 1245 83.1
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1892.5 1105 87.6
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 1761.1 1589 58.3
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 1700.3 1594 56.8
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 1685.2 1604 56.1
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 1627.1 1597 54.0
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 1616.7 1646 53.3
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 1610.1 1589 54.5
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 1609.7 1592 54.3
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 1595.1 1589 54.1
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 1570.1 1580 54.0
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 1554.3 1580 53.9
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 1548.1 1578 53.2
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 1540.0 1593 52.9
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 1538.5 1599 52.6
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 1535.4 1587 53.8
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 1531.2 1590 52.9
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1529.6 1605 52.6
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 1528.1 1580 52.8
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 1522.3 1589 52.8
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 1516.9 1831 47.7
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 1511.1 1435 56.7
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1506.9 1593 51.3
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 1504.2 1594 52.1
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 1503.4 1593 51.2
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 1499.2 1590 52.3
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 1496.9 1578 52.0
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 1496.1 1590 51.0
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 1494.9 1586 51.6
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 1492.2 1590 51.5
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 1488.4 1590 50.8
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1476.5 1593 52.0
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 1476.5 1589 50.8
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 1472.6 1589 50.7
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1469.5 1543 51.6
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1464.1 1573 52.4
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1460.3 1604 51.4
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 1458.7 1593 50.7
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1455.7 1596 50.3
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1454.9 1595 50.2
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 1453.3 1590 50.3
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 1441.0 1590 50.1
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 1435.2 1607 50.5
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 1414.8 1611 49.5
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 1402.9 1585 50.0
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 1400.6 1588 49.0
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 1400.2 1589 49.5
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 1391.3 1582 48.2
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1378.2 1523 51.5
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 1376.7 1579 47.9
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 1374.0 1591 49.2
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1372.8 1581 47.7
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 1372.8 1581 47.7
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1371.7 1581 47.8
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 1371.7 1581 47.8
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1370.5 1579 47.6
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 1370.5 1593 48.7
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 1369.4 1582 47.7
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 1369.0 1593 48.8
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 1368.2 1588 47.4
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1367.8 1583 47.3
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1366.7 1589 48.5
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1354.0 1619 47.8
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1330.9 1589 48.1
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1325.5 1581 46.7
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1300.0 1288 54.6
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1298.1 1591 47.8
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1294.6 1575 47.2
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 1290.8 1604 45.3
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 1284.6 1580 47.7
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1280.8 1196 57.7
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 1279.2 2189 38.0
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1275.0 1607 45.0
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1256.1 1506 47.5
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 1251.1 1596 46.5
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1229.5 1349 49.6
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1169.8 1249 51.6
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1151.3 1279 48.8
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1149.8 1596 42.5
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1126.7 1109 55.3
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1124.4 1598 42.1
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 3.0e-311 1072.4 1388 44.5
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 7.3e-305 1051.2 1119 52.0
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 8.9e-303 1044.3 1241 47.4
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 3.9e-282 975.7 1313 44.4
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 8.2e-248 861.7 1627 34.7
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 7.0e-247 858.6 1656 34.9
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 5.2e-234 815.8 1633 33.4
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 1.7e-224 784.3 1197 40.0
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 3.9e-213 746.5 702 55.3
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.1e-199 701.8 1015 41.8
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 7.6e-169 599.4 893 40.0
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 6.5e-160 569.7 497 62.2
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 1.0e-141 509.2 290 85.5
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 7.7e-137 493.0 505 52.7
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 4.9e-107 394.0 475 48.6
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 5.6e-95 354.0 348 51.4
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 5.6e-95 354.0 474 42.6
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 5.4e-90 337.4 225 78.2
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 6.6e-80 303.9 540 35.4
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 5.2e-77 294.3 815 29.2
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 3.3e-71 275.0 290 50.0
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 3.4e-68 265.0 291 49.1
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 2.1e-65 255.8 296 45.3
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 4.0e-61 241.5 447 35.8
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 8.1e-54 217.2 146 72.6
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 1.1e-53 216.9 292 42.5
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 1.1e-53 216.9 153 70.6
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 1.4e-53 216.5 152 71.1
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 9.3e-50 203.8 127 79.5
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 3.8e-43 181.8 110 80.0
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 7.9e-41 174.1 503 29.2
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 2.5e-39 169.1 105 77.1
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 1.6e-38 166.4 114 71.9
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 4.5e-36 158.3 104 76.0
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 5.7e-31 141.4 145 44.8
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 3.3e-23 115.5 64 87.5
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 9.7e-23 114.0 105 58.1
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 9.7e-23 114.0 282 31.2
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 2.8e-22 112.5 125 50.4
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 1.4e-21 110.2 154 37.7
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 8.5e-19 100.9 104 54.8
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 4.7e-17 95.1 256 28.9
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 4.8e-14 85.1 123 41.5
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 2.9e-11 75.9 55 74.5
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 3.8e-11 75.5 102 39.2
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 3.2e-10 72.4 57 59.6
Lsat_1_v5_gn_9_22560 Lactuca sativa HOM05D000737 ORTHO05D000581 5.7e-07 61.6 33 78.8


User provided reference genes

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