Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000100g0300 Nicotiana tabacum HOM05D003720 ORTHO05D005312 0.0e+00 2540.8 1300 100.0
Nitab4.5_0002116g0040 Nicotiana tabacum HOM05D003720 ORTHO05D005312 0.0e+00 2479.9 1313 97.0
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 0.0e+00 2271.5 1446 82.8
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 0.0e+00 2265.7 1423 83.7
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 0.0e+00 2221.4 1446 81.3
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 0.0e+00 2076.2 1459 75.3
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 0.0e+00 2049.2 1453 74.2
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 0.0e+00 2046.6 1451 74.3
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 0.0e+00 2044.2 1457 74.5
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 0.0e+00 2043.9 1457 74.5
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 0.0e+00 2038.8 1434 74.1
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 0.0e+00 2035.0 1450 74.0
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 0.0e+00 2027.7 1452 73.9
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 0.0e+00 2023.1 1451 72.6
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 2019.6 1456 73.4
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 0.0e+00 2016.5 1448 73.8
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 0.0e+00 2016.1 1436 73.1
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 0.0e+00 2014.6 1451 73.5
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 0.0e+00 2011.1 1452 73.0
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 0.0e+00 2010.0 1446 73.2
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 0.0e+00 2010.0 1451 73.0
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 2009.6 1451 73.0
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 0.0e+00 2008.4 1438 74.3
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 0.0e+00 2005.3 1452 73.6
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 0.0e+00 2004.9 1443 73.7
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 0.0e+00 2004.6 1450 73.4
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 2004.2 1450 73.3
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 0.0e+00 2004.2 1450 73.2
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 0.0e+00 2003.0 1448 71.8
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 2001.9 1451 72.6
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 0.0e+00 2001.1 1453 71.8
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 0.0e+00 1999.9 1450 73.3
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 1999.2 1450 73.3
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 1996.9 1457 73.0
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 0.0e+00 1996.5 1449 72.7
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 0.0e+00 1995.7 1449 72.0
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 0.0e+00 1995.3 1448 72.7
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 0.0e+00 1994.5 1427 73.8
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 0.0e+00 1994.5 1451 72.9
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 0.0e+00 1990.7 1451 72.7
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 0.0e+00 1990.3 1449 72.5
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 0.0e+00 1990.3 1452 72.3
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 0.0e+00 1989.5 1448 73.0
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 0.0e+00 1989.5 1423 73.7
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 0.0e+00 1988.8 1449 72.2
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 0.0e+00 1985.7 1459 72.9
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 0.0e+00 1985.3 1449 72.7
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 0.0e+00 1980.3 1453 72.3
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 0.0e+00 1979.5 1468 71.3
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 0.0e+00 1978.4 1452 72.0
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 0.0e+00 1978.4 1452 72.2
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 0.0e+00 1976.1 1452 72.2
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 0.0e+00 1976.1 1449 72.4
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 0.0e+00 1976.1 1452 72.1
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 0.0e+00 1970.3 1452 72.1
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 0.0e+00 1968.7 1424 73.0
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 0.0e+00 1967.6 1449 72.0
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 0.0e+00 1966.4 1425 72.2
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 0.0e+00 1965.3 1447 71.5
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 0.0e+00 1965.3 1444 71.3
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 0.0e+00 1964.5 1444 71.4
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 0.0e+00 1960.3 1456 70.9
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 0.0e+00 1957.6 1448 72.4
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 0.0e+00 1956.4 1444 71.1
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 0.0e+00 1949.9 1458 70.7
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 0.0e+00 1948.7 1451 71.7
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 0.0e+00 1947.6 1451 71.7
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 0.0e+00 1946.0 1430 72.1
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 0.0e+00 1944.9 1410 72.3
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 0.0e+00 1944.1 1442 71.7
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 0.0e+00 1936.8 1440 71.7
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 0.0e+00 1935.6 1414 70.7
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 0.0e+00 1935.2 1445 71.0
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 1924.4 1456 70.7
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 0.0e+00 1923.3 1452 70.9
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 0.0e+00 1922.1 1513 67.9
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 0.0e+00 1914.8 1250 81.0
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 0.0e+00 1910.2 1438 70.8
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 0.0e+00 1906.3 1394 72.7
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 1899.0 1445 69.8
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 0.0e+00 1872.1 1441 68.9
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 0.0e+00 1867.4 1441 68.8
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 0.0e+00 1867.0 1448 68.3
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 0.0e+00 1865.5 1442 68.3
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 0.0e+00 1864.0 1434 68.7
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 0.0e+00 1862.0 1434 68.7
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 0.0e+00 1858.2 1458 69.3
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 0.0e+00 1853.6 1444 68.2
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 0.0e+00 1837.8 1455 67.6
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 0.0e+00 1832.8 1455 67.3
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 0.0e+00 1796.9 1442 65.5
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 0.0e+00 1791.2 1422 67.2
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 0.0e+00 1780.4 1466 66.0
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 0.0e+00 1776.5 1293 72.9
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 0.0e+00 1759.6 1267 73.6
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 0.0e+00 1670.6 1438 62.4
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 0.0e+00 1666.0 1395 63.9
COL.COLO4_34940 Corchorus olitorius HOM05D003720 ORTHO05D005312 0.0e+00 1654.8 1304 69.6
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 0.0e+00 1653.6 1260 69.4
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 0.0e+00 1621.3 1450 60.6
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 0.0e+00 1588.5 1451 58.9
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 0.0e+00 1565.1 1282 66.1
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 0.0e+00 1560.8 1451 58.0
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 1549.3 1193 68.9
Cpa.g.sc23.154 Carica papaya HOM05D003720 ORTHO05D005312 0.0e+00 1381.7 1112 67.8
FAN23G2146 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 1380.9 1116 67.5
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 0.0e+00 1320.1 1550 49.4
SHI03186 Sapria himalayana HOM05D003720 ORTHO05D005312 0.0e+00 1235.3 1106 59.7
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 0.0e+00 1166.8 900 68.3
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 0.0e+00 1132.1 633 88.3
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 0.0e+00 1093.6 646 82.7
Sp4g08590 Schrenkiella parvula HOM05D003720 ORTHO05D005312 0.0e+00 1081.2 647 82.8
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 1.4e-291 1006.9 524 96.2
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 1.2e-263 914.1 506 89.5
CDE07G1594 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 2.3e-257 893.3 535 82.2
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 3.1e-238 829.7 462 89.0
GSVIVG01015441001 Vitis vinifera HOM05D003720 ORTHO05D005312 6.5e-212 742.3 629 65.8
CDE07G1715 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 6.5e-188 662.5 546 64.5
CDE06G1063 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 3.7e-151 540.4 416 67.3
Cpa.g.sc23.156 Carica papaya HOM05D003720 ORTHO05D005312 1.1e-150 538.9 297 89.9
arahy.Tifrunner.gnm1.ann1.GFGC5E Arachis hypogaea HOM05D003720 ORTHO05D005312 9.5e-139 499.2 391 68.8
arahy.Tifrunner.gnm1.ann1.NRTP45 Arachis hypogaea HOM05D003720 ORTHO05D005312 1.6e-138 498.4 391 68.8
SHI03184 Sapria himalayana HOM05D003720 ORTHO05D005312 2.1e-133 481.5 295 80.0
arahy.Tifrunner.gnm1.ann1.HL09EZ Arachis hypogaea HOM05D003720 ORTHO05D005312 3.5e-133 480.7 341 74.2
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 3.0e-132 477.6 949 36.5
CDE06G2493 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 5.3e-113 413.7 230 88.3
arahy.Tifrunner.gnm1.ann1.CMVH84 Arachis hypogaea HOM05D003720 ORTHO05D005312 7.9e-101 373.2 260 73.8
Cre12.g486209 Chlamydomonas reinhardtii HOM05D003720 ORTHO05D005312 2.6e-96 358.2 814 31.3
arahy.Tifrunner.gnm1.ann1.H6EN9A Arachis hypogaea HOM05D003720 ORTHO05D005312 5.9e-96 357.1 325 64.0
arahy.Tifrunner.gnm1.ann1.QKW76S Arachis hypogaea HOM05D003720 ORTHO05D005312 6.7e-84 317.0 174 89.7
arahy.Tifrunner.gnm1.ann1.D8BJR2 Arachis hypogaea HOM05D003720 ORTHO05D005312 4.8e-82 310.8 257 65.4
arahy.Tifrunner.gnm1.ann1.UX9YIA Arachis hypogaea HOM05D003720 ORTHO05D005312 1.1e-81 309.7 299 61.2
arahy.Tifrunner.gnm1.ann1.XZYA5I Arachis hypogaea HOM05D003720 ORTHO05D005312 3.9e-76 291.2 203 73.4
CDE06G0602 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 3.3e-75 288.1 253 60.5
arahy.Tifrunner.gnm1.ann1.PTA25Z Arachis hypogaea HOM05D003720 ORTHO05D005312 5.3e-65 254.2 203 66.0
Peaxi162Scf00256g00815 Petunia axillaris HOM05D003720 ORTHO05D005312 1.2e-64 253.1 184 73.4
arahy.Tifrunner.gnm1.ann1.T5A0DZ Arachis hypogaea HOM05D003720 ORTHO05D005312 2.9e-63 248.4 166 76.5
arahy.Tifrunner.gnm1.ann1.JURE59 Arachis hypogaea HOM05D003720 ORTHO05D005312 1.8e-52 212.6 119 89.9
HPP92_014851 Vanilla planifolia HOM05D003720 ORTHO05D005312 1.7e-50 206.1 147 70.1
arahy.Tifrunner.gnm1.ann1.C2X0J0 Arachis hypogaea HOM05D057988 ORTHO05D005312 3.1e-49 201.8 182 62.6
FvH4_1g04984 Fragaria vesca HOM05D003720 ORTHO05D005312 2.0e-48 199.1 136 73.5
BcaB02g10050 Brassica carinata HOM05D003720 ORTHO05D005312 1.0e-47 196.8 184 58.2
HPP92_014852 Vanilla planifolia HOM05D003720 ORTHO05D005312 3.3e-38 165.2 170 51.2
FAN19G0708 Fragaria x ananassa HOM05D003720 ORTHO05D005312 5.6e-38 164.5 133 63.2
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 9.8e-35 153.7 358 36.9
arahy.Tifrunner.gnm1.ann1.7C8SEE Arachis hypogaea HOM05D003720 ORTHO05D005312 4.6e-32 144.8 203 47.3
vmacro00971 Vaccinium macrocarpon HOM05D003720 ORTHO05D426581 1.3e-31 143.3 199 45.7
arahy.Tifrunner.gnm1.ann1.PKVI3C Arachis hypogaea HOM05D003720 ORTHO05D002661 6.8e-28 131.0 117 64.1
CDE07G0361 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 3.4e-27 128.6 94 73.4
COL.COLO4_34941 Corchorus olitorius HOM05D003720 ORTHO05D005312 8.3e-26 124.0 85 78.8
Actinidia27749 Actinidia chinensis HOM05D003720 ORTHO05D053439 4.1e-25 121.7 176 45.5
FvH4_1g04990 Fragaria vesca HOM05D003720 ORTHO05D005312 1.2e-24 120.2 67 86.6
FAN23G1072 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.1e-20 107.1 80 70.0
AagrBONN_evm.TU.Sc2ySwM_228.193 Anthoceros agrestis HOM05D011343 ORTHO05D016526 4.4e-19 101.7 226 29.2
Mapoly0060s0082 Marchantia polymorpha HOM05D011343 ORTHO05D016526 8.4e-18 97.4 241 29.9
Pp3c1_31160 Physcomitrium patens HOM05D011343 ORTHO05D016526 3.0e-15 89.0 244 29.5
Actinidia27748 Actinidia chinensis HOM05D003720 ORTHO05D057109 5.1e-15 88.2 86 57.0
SEGI_03183 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 6.6e-15 87.8 114 41.2
Pp3c2_7460 Physcomitrium patens HOM05D011343 ORTHO05D016526 3.3e-14 85.5 221 29.4
Pp3c3_16200 Physcomitrium patens HOM05D011343 ORTHO05D016526 1.3e-13 83.6 222 28.4
CBR_g37703 Chara braunii HOM05D011343 ORTHO05D016526 4.8e-13 81.6 875 20.7
Actinidia34068 Actinidia chinensis HOM05D003720 ORTHO05D005312 8.1e-13 80.9 44 79.5
SEGI_29173 Sequoiadendron giganteum HOM05D011343 ORTHO05D016526 2.0e-11 76.3 235 26.0
FAN23G1875 Fragaria x ananassa HOM05D003720 ORTHO05D207684 2.6e-11 75.9 49 75.5
arahy.Tifrunner.gnm1.ann1.6PJW91 Arachis hypogaea HOM05D003720 ORTHO05D005312 4.4e-11 75.1 49 71.4
Pp3c12_5580 Physcomitrium patens HOM05D011343 ORTHO05D016526 1.7e-10 73.2 244 26.2
SMO143G0325 Selaginella moellendorffii HOM05D011343 ORTHO05D016526 2.7e-08 65.9 223 22.9
arahy.Tifrunner.gnm1.ann1.36S5A5 Arachis hypogaea HOM05D002602 ORTHO05D002661 1.7e-07 63.2 52 57.7


User provided reference genes

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