Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.1e-66 254.6 131 100.0
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 6.6e-64 247.3 131 96.9
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 6.2e-62 240.7 131 93.1
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.4e-61 239.6 131 93.1
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 2.4e-58 228.8 132 90.2
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 4.1e-58 228.0 131 87.8
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 5.4e-58 227.6 131 87.8
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 5.4e-58 227.6 131 87.8
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 5.4e-58 227.6 131 87.8
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 1.0e-56 223.4 131 86.3
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 1.7e-56 222.6 131 84.7
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 5.1e-56 221.1 131 86.3
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.9e-55 219.2 131 83.2
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.9e-55 219.2 131 83.2
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.9e-55 219.2 131 84.0
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 2.5e-55 218.8 133 85.7
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 3.3e-55 218.4 131 84.0
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 4.3e-55 218.0 131 83.2
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 4.3e-55 218.0 131 83.2
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 4.3e-55 218.0 131 84.0
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 5.6e-55 217.6 131 82.4
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 5.6e-55 217.6 131 83.2
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 5.6e-55 217.6 133 84.2
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 9.5e-55 216.9 131 82.4
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 9.5e-55 216.9 131 82.4
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 9.5e-55 216.9 131 82.4
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 9.5e-55 216.9 131 82.4
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 9.5e-55 216.9 131 83.2
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 9.5e-55 216.9 131 82.4
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 9.5e-55 216.9 131 84.7
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 1.6e-54 216.1 131 81.7
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 2.1e-54 215.7 131 81.7
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 2.1e-54 215.7 131 83.2
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 3.6e-54 214.9 131 81.7
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 6.2e-54 214.2 132 82.6
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 6.2e-54 214.2 131 82.4
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 1.1e-53 213.4 131 81.7
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 1.4e-53 213.0 131 82.4
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 1.8e-53 212.6 132 81.8
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 1.8e-53 212.6 132 81.8
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 1.8e-53 212.6 132 81.8
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 1.8e-53 212.6 132 81.8
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 1.8e-53 212.6 130 83.8
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 2.3e-53 212.2 132 83.3
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 2.3e-53 212.2 132 83.3
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 3.1e-53 211.8 131 82.4
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 3.1e-53 211.8 131 81.7
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 3.1e-53 211.8 130 83.8
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 4.0e-53 211.5 132 81.1
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 4.0e-53 211.5 131 82.4
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 4.0e-53 211.5 131 80.2
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 4.0e-53 211.5 131 79.4
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 5.2e-53 211.1 130 83.1
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 5.2e-53 211.1 132 82.6
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 5.2e-53 211.1 132 82.6
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 5.2e-53 211.1 131 81.7
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 6.8e-53 210.7 131 82.4
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 6.8e-53 210.7 131 82.4
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 8.9e-53 210.3 131 82.4
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.2e-52 209.9 130 83.1
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 1.2e-52 209.9 131 81.7
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 2.0e-52 209.1 133 80.5
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 2.6e-52 208.8 131 79.4
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 2.6e-52 208.8 131 82.4
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 3.4e-52 208.4 131 80.2
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 3.4e-52 208.4 132 81.1
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 3.4e-52 208.4 131 80.2
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 4.4e-52 208.0 132 81.8
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 4.4e-52 208.0 131 80.9
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 4.4e-52 208.0 131 82.4
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 7.6e-52 207.2 130 81.5
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 7.6e-52 207.2 130 81.5
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 1.3e-51 206.5 131 80.2
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.3e-51 206.5 131 78.6
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.3e-51 206.5 132 81.8
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.7e-51 206.1 131 80.9
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 80.9
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 2.9e-51 205.3 130 80.0
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.9e-51 205.3 132 81.8
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 4.9e-51 204.5 131 78.6
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 4.9e-51 204.5 132 81.1
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 4.9e-51 204.5 132 81.1
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 4.9e-51 204.5 131 79.4
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 6.4e-51 204.1 132 78.8
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 6.4e-51 204.1 132 80.3
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 1.1e-50 203.4 131 77.9
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 1.1e-50 203.4 132 81.8
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 1.4e-50 203.0 132 80.3
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.4e-50 203.0 134 81.3
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.4e-50 203.0 134 81.3
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 1.4e-50 203.0 132 82.6
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 1.9e-50 202.6 131 80.9
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 4.1e-50 201.4 130 80.0
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 7.1e-50 200.7 129 80.6
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 1.2e-49 199.9 129 80.6
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 1.2e-49 199.9 131 78.6
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 1.2e-49 199.9 132 79.5
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 1.6e-49 199.5 130 79.2
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.6e-49 199.5 132 79.5
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 1.6e-49 199.5 129 80.6
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 2.7e-49 198.7 132 80.3
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 6.0e-49 197.6 134 77.6
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.0e-48 196.8 132 76.5
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 1.7e-48 196.1 131 77.9
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.7e-48 196.1 132 79.5
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 1.7e-48 196.1 131 77.9
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 2.3e-48 195.7 133 78.9
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 3.0e-48 195.3 133 78.9
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 3.9e-48 194.9 130 76.2
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 3.9e-48 194.9 132 78.0
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 5.1e-48 194.5 131 78.6
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 5.1e-48 194.5 132 76.5
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 6.6e-48 194.1 130 76.2
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 1.1e-47 193.4 130 75.4
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 1.1e-47 193.4 130 75.4
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 1.9e-47 192.6 131 76.3
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 1.9e-47 192.6 133 78.2
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 2.1e-46 189.1 124 76.6
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 2.1e-46 189.1 130 76.2
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 2.8e-46 188.7 130 76.2
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.6e-46 188.3 104 91.3
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 2.4e-45 185.7 129 76.7
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 1.5e-44 183.0 103 90.3
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 2.0e-44 182.6 131 74.0
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 4.4e-44 181.4 130 74.6
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 5.8e-44 181.0 134 71.6
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 1.9e-42 176.0 163 62.0
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 7.8e-41 170.6 130 67.7
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 3.0e-40 168.7 124 70.2
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 3.9e-40 168.3 123 69.9
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.3e-39 165.2 126 69.0
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 1.3e-38 163.3 122 68.9
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 4.8e-38 161.4 121 71.1
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 6.2e-38 161.0 126 68.3
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.9e-35 152.1 127 68.5
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.3e-32 143.3 127 64.6
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.0e-32 142.1 120 63.3
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 5.6e-31 137.9 132 60.6
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 1.8e-24 116.3 127 50.4
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 1.8e-24 116.3 78 75.6
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 5.8e-20 101.3 105 52.4
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 9.3e-18 94.0 66 68.2
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 3.1e-13 79.0 48 81.2
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 1.0e-08 63.9 92 41.3
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 1.3e-08 63.5 78 43.6


User provided reference genes

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