Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.7e-111 403.7 208 100.0
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-100 370.2 210 92.4
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 6.1e-88 327.8 206 80.1
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.3e-77 291.2 208 72.6
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.3e-77 291.2 208 72.6
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 4.5e-75 285.0 208 71.2
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.2e-73 278.9 209 70.3
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.2e-73 278.5 203 70.0
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 7.2e-73 277.7 203 70.0
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 2.1e-72 276.2 205 70.7
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 3.0e-71 272.3 194 68.6
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 4.4e-70 268.5 203 67.0
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 9.8e-70 267.3 205 67.8
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.7e-69 266.5 203 67.5
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 4.1e-68 261.9 203 66.5
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.4e-62 242.3 180 66.1
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 3.7e-61 238.8 177 66.7
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.3e-61 238.0 180 66.1
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.1e-60 237.3 205 61.5
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-60 236.9 205 61.5
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.6e-59 233.4 203 59.1
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.5e-59 232.3 201 62.2
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 3.8e-58 228.8 180 65.6
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 5.0e-58 228.4 158 72.8
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.5e-57 226.9 177 63.3
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.2e-56 223.8 180 62.2
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 1.2e-56 223.8 172 66.3
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 2.1e-56 223.0 203 57.1
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 3.6e-56 222.2 170 64.1
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 4.7e-56 221.9 176 60.2
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 6.1e-56 221.5 180 61.1
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 8.0e-56 221.1 181 60.8
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 1.0e-55 220.7 203 55.7
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.8e-55 219.9 181 60.8
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 3.1e-55 219.2 182 62.1
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 3.1e-55 219.2 198 58.1
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 4.0e-55 218.8 176 62.5
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 5.2e-55 218.4 182 60.4
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 1.5e-54 216.9 203 56.2
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 2.6e-54 216.1 191 59.2
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 4.4e-54 215.3 203 55.2
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.7e-53 213.4 201 57.2
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 1.7e-53 213.4 202 56.4
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 2.2e-53 213.0 180 60.0
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 2.2e-53 213.0 178 59.6
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 2.2e-53 213.0 202 55.4
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.2e-53 213.0 201 56.7
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 2.2e-53 213.0 200 56.5
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 4.9e-53 211.8 202 53.0
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 8.3e-53 211.1 207 56.0
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.4e-52 210.3 202 56.4
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.4e-52 209.5 202 56.4
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 4.1e-52 208.8 201 58.2
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.4e-52 208.4 202 56.4
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 9.2e-52 207.6 202 55.9
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.2e-52 207.6 202 55.9
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.2e-52 207.6 202 55.9
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.7e-51 206.1 202 55.4
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.7e-51 206.1 170 60.0
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.6e-51 205.3 177 59.9
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 6.0e-51 204.9 201 53.7
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.0e-51 204.9 202 55.4
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 1.3e-50 203.8 201 54.2
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 1.7e-50 203.4 185 56.2
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 1.7e-50 203.4 187 55.1
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.0e-50 202.6 201 54.2
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 6.6e-50 201.4 201 53.7
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 6.6e-50 201.4 185 58.9
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 8.6e-50 201.1 181 56.9
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 5.6e-49 198.4 187 56.1
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 9.5e-49 197.6 201 54.7
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 2.8e-48 196.1 168 58.9
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 4.7e-48 195.3 171 60.8
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 4.7e-48 195.3 209 50.7
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 8.0e-48 194.5 205 53.2
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.8e-47 193.4 199 55.8
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 3.1e-47 192.6 177 53.7
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.0e-47 192.2 169 58.0
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 8.9e-47 191.0 198 49.0
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.8e-46 188.3 169 56.8
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 5.8e-46 188.3 169 56.8
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.9e-45 186.0 186 55.4
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-44 184.1 198 54.0
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 1.4e-44 183.7 182 51.1
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 2.4e-44 183.0 182 53.3
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 4.1e-44 182.2 182 54.9
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 5.4e-44 181.8 196 52.6
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 7.0e-44 181.4 176 51.7
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 7.0e-44 181.4 196 52.0
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 9.2e-44 181.0 189 51.3
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 9.2e-44 181.0 199 47.7
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.6e-43 180.3 188 48.9
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 1.6e-43 180.3 182 52.7
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 6.0e-43 178.3 176 51.1
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.0e-42 177.6 192 49.0
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 1.7e-42 176.8 191 51.8
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 1.7e-42 176.8 191 51.8
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 2.3e-42 176.4 203 48.8
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 3.0e-42 176.0 192 50.5
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.0e-42 176.0 130 68.5
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 1.5e-41 173.7 171 54.4
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.9e-41 173.3 162 52.5
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 4.3e-41 172.2 209 50.2
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 4.3e-41 172.2 192 51.6
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 7.3e-41 171.4 192 51.6
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 7.3e-41 171.4 176 52.3
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 9.5e-41 171.0 188 52.7
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 9.5e-41 171.0 186 50.0
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.2e-40 170.6 203 47.8
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 2.8e-40 169.5 174 51.1
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 6.2e-40 168.3 177 48.6
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 2.3e-39 166.4 189 48.1
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 4.0e-39 165.6 177 49.2
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 5.2e-39 165.2 185 50.3
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 8.9e-39 164.5 180 46.1
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 2.0e-38 163.3 204 47.1
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 4.4e-38 162.2 191 49.2
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 7.5e-38 161.4 171 48.0
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.7e-37 160.2 187 45.5
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 2.9e-37 159.5 177 48.6
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 6.4e-37 158.3 177 49.2
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 8.3e-37 157.9 178 50.0
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 1.4e-36 157.1 183 44.3
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.9e-36 156.8 171 49.1
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 5.4e-36 155.2 197 48.2
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.2e-35 154.1 188 46.8
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.2e-35 154.1 188 46.8
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 1.2e-35 154.1 209 46.4
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 1.2e-35 154.1 180 46.7
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.6e-35 153.7 204 42.6
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.6e-35 153.7 203 43.3
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 2.1e-35 153.3 158 48.7
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 2.1e-35 153.3 202 47.0
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 3.5e-35 152.5 206 47.1
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 7.8e-35 151.4 194 45.4
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.9e-34 149.1 105 69.5
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 8.6e-34 147.9 120 59.2
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.5e-33 147.1 116 60.3
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.6e-32 143.7 158 47.5
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 4.7e-32 142.1 206 42.2
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 6.2e-32 141.7 193 41.5
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 4.0e-31 139.0 117 58.1
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.2e-30 137.5 194 39.2
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 3.4e-30 136.0 150 46.0
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 5.8e-30 135.2 121 52.1
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.5e-27 125.9 208 42.3
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 2.3e-26 123.2 201 38.8
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.6e-24 115.9 157 46.5
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 5.3e-23 112.1 112 46.4
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.7e-19 99.8 70 70.0
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 1.2e-11 74.3 87 39.1
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 3.5e-11 72.8 143 31.5
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 3.0e-10 69.7 90 34.4
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 9.6e-09 64.7 103 39.8
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 9.6e-09 64.7 168 28.6
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 1.3e-08 64.3 104 29.8


User provided reference genes

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