Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.1e-211 737.6 417 100.0
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.5e-159 565.1 395 85.8
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 9.2e-128 461.1 397 71.8
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 9.2e-128 461.1 387 73.4
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 4.6e-119 432.2 388 69.6
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.3e-102 376.7 443 54.9
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.1e-102 375.6 443 55.3
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 5.5e-96 355.5 487 51.7
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 5.9e-82 308.9 495 46.9
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.7e-81 307.4 275 67.3
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.6e-79 299.7 511 45.2
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.8e-78 297.4 511 45.0
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 4.1e-75 286.2 406 49.8
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 2.8e-68 263.5 396 48.2
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.2e-65 253.8 409 47.9
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.9e-65 253.4 398 46.0
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.5e-64 249.2 414 46.4
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 9.4e-64 248.4 368 45.9
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 3.6e-63 246.5 303 51.2
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 8.0e-63 245.4 436 43.8
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.0e-62 245.0 385 44.2
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.5e-61 241.1 377 43.8
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 3.7e-60 236.5 393 43.5
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.1e-55 220.7 408 41.9
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 8.0e-55 218.8 409 45.5
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 8.0e-55 218.8 413 43.8
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.8e-54 217.6 415 42.2
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.2e-54 216.1 402 44.0
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 8.8e-54 215.3 421 40.1
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.0e-53 214.2 365 44.1
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 6.3e-52 209.1 368 42.1
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 8.3e-52 208.8 387 39.5
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.1e-51 206.8 367 44.7
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.6e-50 204.5 449 39.9
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.6e-50 204.5 369 39.6
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.0e-50 204.1 377 42.2
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 4.5e-50 203.0 459 39.9
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.5e-50 203.0 403 41.9
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.0e-49 199.5 363 44.1
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 5.0e-49 199.5 399 37.3
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.5e-48 198.0 400 41.8
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.9e-48 197.6 401 40.9
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 2.5e-48 197.2 339 41.6
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 3.2e-48 196.8 391 39.4
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 3.2e-48 196.8 391 39.4
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 5.5e-48 196.1 395 38.7
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 4.7e-47 193.0 408 42.6
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 8.0e-47 192.2 384 38.0
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.0e-46 191.8 365 42.5
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 2.3e-46 190.7 396 42.7
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 2.3e-46 190.7 396 42.7
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 3.0e-46 190.3 366 39.1
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 6.8e-46 189.1 390 43.1
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 2.6e-45 187.2 390 38.7
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 2.4e-43 180.6 417 39.3
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 4.1e-43 179.9 375 37.6
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 4.1e-43 179.9 419 38.4
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 5.4e-43 179.5 420 38.8
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 7.0e-43 179.1 430 36.7
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 2.7e-42 177.2 358 36.9
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 2.7e-42 177.2 432 35.2
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 4.5e-42 176.4 381 39.1
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.0e-41 175.3 424 36.1
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.3e-41 174.1 442 34.2
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 2.9e-41 173.7 455 36.3
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 1.1e-40 171.8 438 34.0
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 1.2e-39 168.3 402 34.1
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 8.0e-39 165.6 430 38.6
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.3e-38 164.1 466 35.6
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 3.0e-38 163.7 398 38.7
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 8.9e-38 162.2 451 32.2
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 8.9e-38 162.2 353 37.4
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 1.5e-37 161.4 466 32.2
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 2.6e-37 160.6 348 37.9
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.3e-36 158.3 357 34.7
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.7e-36 157.9 477 31.7
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 4.9e-36 156.4 476 31.9
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 4.9e-36 156.4 365 34.2
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 8.3e-36 155.6 352 36.4
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 8.3e-36 155.6 365 37.3
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 3.2e-35 153.7 445 34.2
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.6e-34 151.4 379 35.6
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 2.7e-34 150.6 426 36.4
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 4.6e-34 149.8 355 37.2
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 6.0e-34 149.4 350 35.4
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.3e-33 148.3 355 36.1
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 3.0e-33 147.1 396 33.8
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 3.9e-33 146.7 369 34.1
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 3.9e-33 146.7 369 34.1
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.5e-32 144.8 234 43.6
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.5e-32 144.8 472 33.9
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 2.5e-32 144.1 378 34.1
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 9.5e-32 142.1 375 33.1
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 1.6e-31 141.4 399 32.6
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 2.1e-31 141.0 231 42.9
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 2.8e-31 140.6 394 34.5
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 5.2e-30 136.3 263 41.4
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 8.9e-30 135.6 373 33.2
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.6e-29 134.0 427 33.5
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 2.6e-29 134.0 463 33.0
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 5.8e-29 132.9 374 35.0
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 5.8e-29 132.9 416 36.5
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 9.8e-29 132.1 236 41.9
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 4.9e-28 129.8 428 30.1
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 8.3e-28 129.0 443 35.0
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.9e-27 127.9 404 30.7
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 3.2e-27 127.1 418 33.5
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 4.1e-27 126.7 446 34.1
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 5.4e-27 126.3 236 41.9
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.6e-26 124.8 357 34.2
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 2.7e-26 124.0 523 29.8
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 2.7e-26 124.0 502 31.9
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 2.7e-26 124.0 219 41.6
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.0e-25 122.1 455 34.1
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 6.6e-25 119.4 455 34.1
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.9e-24 117.9 387 33.3
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 5.6e-24 116.3 532 26.9
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 7.3e-24 115.9 379 31.7
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.1e-23 114.4 421 31.8
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 4.7e-23 113.2 426 32.9
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 6.2e-23 112.8 379 30.6
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.4e-22 111.7 426 29.1
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.8e-22 111.3 429 33.8
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.0e-22 110.2 445 29.9
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 5.2e-22 109.8 449 29.6
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 8.9e-22 109.0 447 30.0
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 8.9e-22 109.0 447 30.0
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 3.7e-20 103.6 453 28.3
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 4.9e-20 103.2 433 29.1
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 4.1e-19 100.1 506 28.5
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 9.2e-19 99.0 453 28.9
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.2e-18 98.6 358 30.7
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.7e-17 94.7 452 27.2
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 1.7e-17 94.7 133 49.6
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.3e-17 94.4 463 30.5
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 2.5e-16 90.9 148 40.5
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 5.6e-16 89.7 395 28.6
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 7.3e-16 89.4 437 27.9
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 1.2e-15 88.6 393 31.8
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.2e-15 88.6 388 27.6
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.1e-15 87.8 468 26.5
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 6.2e-15 86.3 493 24.7
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.1e-14 85.5 95 51.6
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 5.2e-14 83.2 391 31.5
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.5e-13 81.6 358 30.4
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 2.6e-13 80.9 468 28.0
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.4e-13 80.5 94 51.1
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 7.6e-13 79.3 320 27.5
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 3.8e-12 77.0 406 29.3
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 8.4e-12 75.9 394 31.0
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.2e-11 73.9 248 34.3
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 3.2e-11 73.9 445 24.3
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 4.1e-11 73.6 68 64.7
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 5.4e-11 73.2 94 48.9
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 2.7e-10 70.9 394 31.5
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 2.7e-10 70.9 462 25.1
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 1.7e-09 68.2 462 26.2
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 5.1e-09 66.6 360 26.1
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 8.7e-09 65.9 367 27.8
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.5e-08 65.1 442 23.1
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 5.6e-08 63.2 366 29.0
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 7.3e-08 62.8 116 40.5
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.2e-07 62.0 175 30.3
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 2.8e-07 60.8 49 65.3
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 4.7e-07 60.1 76 46.1
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 6.2e-07 59.7 148 30.4
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 1.1e-06 58.9 440 25.9
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.1e-06 58.9 179 31.3
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.1e-06 58.9 61 50.8
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 6.9e-06 56.2 48 60.4


User provided reference genes

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