Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 7.8e-141 503.8 262 100.0
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 2.5e-99 365.9 263 73.8
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 5.3e-97 358.2 262 71.8
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 3.8e-95 352.1 262 71.0
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 8.5e-95 350.9 260 71.9
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.1e-94 350.5 261 72.0
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.1e-94 350.5 264 71.6
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.5e-94 349.4 260 71.9
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 2.5e-94 349.4 261 72.0
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 4.2e-94 348.6 262 69.8
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 7.9e-93 344.4 262 70.6
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.4e-92 343.6 263 70.0
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 5.1e-92 341.7 257 70.8
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 1.5e-91 340.1 273 69.2
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 1.3e-90 337.0 265 68.7
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 2.2e-90 336.3 263 68.8
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 6.3e-90 334.7 247 74.1
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 8.2e-90 334.3 263 69.6
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.1e-89 334.0 295 64.1
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 1.8e-89 333.2 265 68.7
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 2.0e-88 329.7 265 69.8
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 3.4e-88 328.9 266 69.5
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 4.5e-88 328.6 262 67.9
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 4.5e-88 328.6 263 67.3
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 5.9e-88 328.2 262 66.8
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 7.7e-88 327.8 265 69.4
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 7.7e-88 327.8 266 69.5
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 2.9e-87 325.9 265 69.1
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.9e-87 325.9 264 69.3
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.5e-87 324.3 279 66.3
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 8.5e-87 324.3 265 69.1
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 1.4e-86 323.6 265 69.1
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 2.5e-86 322.8 265 67.9
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 4.2e-86 322.0 263 67.7
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 9.4e-86 320.9 263 65.8
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 2.7e-85 319.3 265 67.5
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.7e-85 319.3 263 67.7
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 6.1e-85 318.2 263 66.5
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 6.1e-85 318.2 263 66.9
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 6.1e-85 318.2 262 65.3
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 6.1e-85 318.2 261 67.8
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.1e-84 315.1 263 66.9
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.5e-83 313.5 264 66.7
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 2.6e-83 312.8 233 72.5
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 2.6e-83 312.8 263 65.8
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.3e-83 312.4 264 67.0
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 3.3e-83 312.4 265 66.8
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 7.4e-83 311.2 263 65.0
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 1.3e-82 310.5 265 65.3
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 6.3e-82 308.1 263 65.0
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 8.2e-82 307.8 263 65.0
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.4e-81 307.0 238 71.0
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.1e-81 305.4 266 65.0
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 4.1e-81 305.4 264 64.8
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 5.3e-81 305.1 263 65.0
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 9.1e-81 304.3 266 64.3
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 9.1e-81 304.3 261 64.4
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.5e-80 303.5 266 66.2
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 2.6e-80 302.8 266 65.4
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.6e-80 302.8 269 63.2
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 3.5e-80 302.4 257 63.8
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.0e-79 300.8 244 68.4
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.3e-79 300.4 257 63.4
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 3.8e-79 298.9 260 64.6
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.1e-78 297.4 231 70.1
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.9e-78 296.6 262 62.2
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 3.2e-78 295.8 263 62.7
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 5.5e-78 295.0 262 63.7
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 2.1e-77 293.1 266 63.5
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 2.1e-77 293.1 264 62.5
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 2.7e-77 292.7 263 62.0
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.7e-77 292.7 264 62.1
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 8.0e-77 291.2 263 61.6
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 6.7e-76 288.1 295 58.3
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 8.8e-76 287.7 287 57.8
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 1.5e-75 287.0 263 61.2
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 3.3e-75 285.8 263 60.1
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 7.4e-75 284.6 263 61.6
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 7.4e-75 284.6 262 61.5
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 1.3e-74 283.9 262 62.6
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 1.7e-74 283.5 232 68.5
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 8.2e-74 281.2 262 59.9
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 1.6e-72 276.9 271 58.7
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 3.5e-72 275.8 263 61.6
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 4.5e-72 275.4 269 60.2
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 7.7e-72 274.6 235 65.5
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.0e-71 274.2 270 57.8
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 2.2e-71 273.1 266 60.5
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 3.8e-71 272.3 231 67.1
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.8e-71 272.3 264 59.5
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 8.5e-71 271.2 264 60.6
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 2.5e-70 269.6 263 60.5
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 4.2e-70 268.9 268 60.1
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 7.2e-70 268.1 264 59.8
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 9.4e-70 267.7 264 58.7
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 1.2e-69 267.3 262 58.8
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.2e-69 267.3 262 58.0
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.6e-69 266.9 265 60.0
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 4.7e-69 265.4 264 58.3
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.4e-68 263.8 267 56.2
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 6.8e-68 261.5 276 56.2
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 2.6e-67 259.6 275 56.4
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 2.6e-67 259.6 267 58.1
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 9.7e-67 257.7 261 57.5
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.7e-66 255.8 276 56.5
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.8e-65 253.4 276 56.2
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 2.7e-64 249.6 268 56.3
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 3.5e-64 249.2 313 49.8
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 3.5e-64 249.2 313 49.8
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.3e-63 247.3 243 61.7
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.7e-61 239.6 246 55.7
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 6.1e-61 238.4 235 61.7
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 6.1e-61 238.4 235 61.7
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 2.0e-59 233.4 263 56.3
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.6e-59 233.0 233 59.2
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 4.4e-59 232.3 233 59.2
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 8.3e-58 228.0 240 57.9
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 9.1e-57 224.6 221 59.7
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.0e-56 223.4 233 57.9
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 3.5e-56 222.6 230 57.4
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 4.5e-56 222.2 307 47.9
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 4.5e-56 222.2 307 47.9
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 1.3e-55 220.7 223 58.3
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 8.6e-55 218.0 263 52.9
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 6.1e-53 211.8 234 56.0
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 8.9e-52 208.0 246 54.1
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.7e-50 202.6 169 66.9
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 8.3e-50 201.4 252 51.2
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.5e-48 196.1 167 66.5
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 3.5e-48 196.1 168 66.7
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 4.5e-48 195.7 161 68.9
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 7.3e-46 188.3 246 50.4
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.8e-44 183.7 169 61.5
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 7.0e-41 171.8 146 65.1
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 9.8e-35 151.4 150 57.3
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 2.2e-34 150.2 103 77.7
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 8.3e-34 148.3 149 61.1
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 2.7e-32 143.3 141 59.6
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 3.5e-32 142.9 282 38.3
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 3.3e-30 136.3 170 52.9
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 4.7e-29 132.5 128 60.9
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.7e-26 124.0 182 47.8
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.2e-25 119.8 93 66.7
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 6.6e-23 112.1 161 50.3
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.3e-22 109.8 282 33.3
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 2.9e-18 96.7 71 73.2
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 2.4e-17 93.6 200 35.5
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 1.6e-13 80.9 115 44.3
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 5.3e-12 75.9 104 45.2
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 5.4e-09 65.9 54 70.4
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 4.6e-08 62.8 64 59.4
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.3e-06 56.6 30 80.0
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 4.3e-06 56.2 29 79.3


User provided reference genes

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