Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 0.0e+00 1416.0 711 100.0
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 0.0e+00 1305.0 712 94.0
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 0.0e+00 1218.8 711 86.4
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 0.0e+00 1176.0 714 84.5
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 0.0e+00 1172.1 753 80.7
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 0.0e+00 1169.8 753 80.6
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 0.0e+00 1163.3 754 80.2
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 5.2e-288 994.2 704 71.3
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 2.0e-284 982.2 758 67.8
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.5e-282 976.1 711 71.0
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.7e-281 971.1 752 67.3
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.5e-279 966.1 756 67.3
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 8.3e-278 960.3 706 70.0
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.1e-277 959.9 754 65.8
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 6.6e-275 950.7 746 67.2
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 6.1e-273 944.1 733 67.5
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 2.0e-271 939.1 792 64.1
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 5.4e-269 931.0 740 66.5
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 1.5e-266 922.9 709 66.6
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 2.8e-265 918.7 708 67.4
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 3.6e-265 918.3 830 60.7
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 4.7e-265 917.9 707 66.8
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 6.1e-265 917.5 709 67.3
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 6.1e-265 917.5 707 67.3
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 1.4e-264 916.4 707 66.8
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 2.3e-264 915.6 707 67.8
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.4e-263 911.8 705 67.4
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.7e-262 909.4 773 63.6
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 3.7e-262 908.3 707 67.3
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.1e-261 904.8 709 67.0
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 4.1e-261 904.8 708 66.4
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 9.2e-261 903.7 708 66.2
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.2e-260 903.3 710 65.4
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 1.3e-259 899.8 734 63.8
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 3.6e-257 891.7 754 61.9
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 6.2e-257 891.0 708 65.4
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 3.1e-256 888.6 713 64.4
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 8.9e-256 887.1 705 64.8
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.9e-256 887.1 718 64.1
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 5.8e-255 884.4 721 63.8
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 9.8e-255 883.6 746 63.7
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.2e-254 882.5 707 64.6
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 6.4e-254 880.9 709 65.6
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.4e-253 879.0 718 63.2
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 4.1e-253 878.2 707 64.2
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 5.4e-253 877.9 719 63.6
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 5.4e-253 877.9 750 62.1
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 7.1e-253 877.5 711 63.7
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 6.0e-252 874.4 679 67.0
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 6.0e-252 874.4 714 65.1
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 2.3e-251 872.5 713 63.8
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 5.1e-251 871.3 706 64.0
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 7.3e-250 867.5 715 64.9
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 1.6e-249 866.3 711 63.4
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 2.8e-249 865.5 715 64.5
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.6e-249 865.1 711 63.2
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 8.1e-249 864.0 703 64.3
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.4e-248 863.2 689 66.5
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.4e-248 863.2 708 63.4
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 4.0e-248 861.7 704 63.5
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 5.2e-248 861.3 704 63.4
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 2.6e-247 859.0 704 63.2
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 4.4e-247 858.2 746 62.2
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 4.9e-246 854.7 743 62.6
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 8.3e-246 854.0 749 61.5
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 2.7e-244 849.0 703 62.6
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.0e-243 847.0 715 62.5
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.7e-243 846.3 715 62.5
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.3e-243 845.9 711 63.4
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 8.6e-243 844.0 704 62.4
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.9e-242 842.8 707 61.4
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 5.6e-242 841.3 721 60.6
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 1.2e-241 840.1 709 61.9
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 6.8e-240 834.3 711 61.3
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.5e-239 833.2 708 61.7
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 4.4e-239 831.6 705 61.8
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.3e-238 830.1 712 61.2
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 4.9e-238 828.2 704 61.4
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 6.4e-238 827.8 684 64.3
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 6.4e-238 827.8 687 62.6
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 6.4e-238 827.8 702 61.0
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 3.2e-237 825.5 651 66.2
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 7.1e-237 824.3 705 61.3
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 9.3e-237 823.9 668 63.3
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.7e-235 819.7 705 60.3
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 6.6e-235 817.8 709 60.8
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 2.1e-233 812.8 705 60.1
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 2.8e-233 812.4 705 61.0
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.8e-232 809.7 712 60.4
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.8e-232 809.7 666 62.6
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.7e-230 803.1 664 64.8
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 2.9e-230 802.4 705 60.4
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 2.9e-230 802.4 707 59.8
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 3.8e-230 802.0 703 60.9
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 5.4e-229 798.1 705 60.3
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 7.1e-229 797.7 714 59.2
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 9.3e-229 797.3 705 60.3
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 1.6e-228 796.6 711 59.8
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 4.6e-228 795.0 709 59.7
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 1.0e-227 793.9 711 59.8
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 3.0e-227 792.3 706 59.8
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 5.1e-227 791.6 661 64.3
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 5.6e-226 788.1 705 60.0
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 2.1e-225 786.2 709 58.5
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 2.4e-224 782.7 650 64.3
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 6.9e-224 781.2 711 59.4
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.6e-223 779.2 664 61.4
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 5.8e-223 778.1 709 59.9
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 9.6e-218 760.8 712 56.9
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.6e-217 760.0 725 57.5
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 4.0e-216 755.4 614 66.0
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 6.5e-214 748.0 707 56.7
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.1e-213 747.3 665 59.4
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 6.5e-206 721.5 717 56.3
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 8.4e-206 721.1 713 55.0
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 9.3e-205 717.6 719 56.3
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 4.1e-200 702.2 656 58.8
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 5.5e-197 691.8 689 54.3
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.4e-192 677.2 546 66.1
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.2e-191 674.1 601 61.2
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 5.5e-189 665.2 618 59.7
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.5e-183 646.0 625 57.9
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 6.7e-179 631.7 707 52.2
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-173 614.4 568 60.0
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 8.0e-172 608.2 742 46.8
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.0e-170 603.6 583 56.6
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 6.5e-166 588.6 653 50.8
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.1e-160 571.2 702 49.3
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 3.8e-158 562.8 498 60.6
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 2.9e-145 520.0 713 43.1
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 7.8e-135 485.3 548 50.7
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 8.7e-118 428.7 874 34.7
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.4e-115 420.6 342 63.2
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.8e-113 413.3 271 75.3
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.5e-109 400.6 273 73.3
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 5.3e-99 366.3 431 50.3
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.6e-87 328.2 367 51.5
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 4.1e-83 313.5 469 41.2
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 1.5e-77 295.0 322 52.2
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 2.2e-60 238.0 510 36.3
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 5.5e-56 223.4 289 46.4
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.0e-50 204.9 194 55.7
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.9e-41 174.5 135 63.0
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 8.6e-41 172.9 138 64.5
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 2.3e-33 148.3 133 58.6
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.5e-32 145.6 121 61.2
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 1.9e-32 145.2 322 33.9
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 4.0e-30 137.5 367 32.2
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.7e-28 132.1 172 44.2
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 4.1e-27 127.5 174 44.3
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 6.0e-26 123.6 126 56.3
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 6.6e-25 120.2 89 67.4
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 3.9e-17 94.4 84 59.5
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 2.5e-16 91.7 162 38.3
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 5.6e-16 90.5 86 52.3
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 3.4e-13 81.3 59 64.4
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 8.4e-12 76.6 51 66.7
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 1.4e-11 75.9 57 63.2
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.2e-11 74.7 47 66.0
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.2e-11 74.7 47 66.0
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.5e-08 65.1 37 78.4
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 7.3e-08 63.5 65 47.7


User provided reference genes

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