Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000085g0350 Nicotiana tabacum HOM05D000424 ORTHO05D008586 1.7e-76 289.3 147 100.0
FvH4_4g00721 Fragaria vesca HOM05D000424 ORTHO05D000355 1.7e-36 156.4 132 59.1
Sp3g20430 Schrenkiella parvula HOM05D000424 ORTHO05D000355 3.2e-27 125.6 129 48.8
TWI09G0390 Tripterygium wilfordii HOM05D000424 ORTHO05D008586 1.6e-26 123.2 131 49.6
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 6.1e-26 121.3 127 48.0
BcaB03g14655 Brassica carinata HOM05D000424 ORTHO05D000355 1.4e-25 120.2 126 48.4
C03p52660 Brassica napus HOM05D000424 ORTHO05D000355 1.8e-25 119.8 131 46.6
A03p42890 Brassica napus HOM05D000424 ORTHO05D008586 2.3e-25 119.4 127 48.0
Carub.0003s2283 Capsella rubella HOM05D000424 ORTHO05D000355 4.0e-25 118.6 138 44.2
AL3G36970 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 5.2e-25 118.2 146 43.8
Sopen09g031270 Solanum pennellii HOM05D000424 ORTHO05D000355 5.2e-25 118.2 70 88.6
BolC3t17534H Brassica oleracea HOM05D000424 ORTHO05D000355 6.8e-25 117.9 130 46.2
A03p42910 Brassica napus HOM05D000424 ORTHO05D000355 1.5e-24 116.7 151 42.4
BraA03t13435Z Brassica rapa HOM05D000424 ORTHO05D000355 1.5e-24 116.7 147 42.9
AT3G22670 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 2.6e-24 115.9 125 46.4
BcaC01g03431 Brassica carinata HOM05D000424 ORTHO05D000355 2.6e-24 115.9 133 45.1
BcaB04g19212 Brassica carinata HOM05D000424 ORTHO05D000355 4.4e-24 115.2 124 46.8
Solyc09g082390.3 Solanum lycopersicum HOM05D000424 ORTHO05D000355 9.8e-24 114.0 70 85.7
PGSC0003DMG400032245 Solanum tuberosum HOM05D000424 ORTHO05D000355 1.2e-21 107.1 63 85.7
SGA_v2.0_scaffold79G25581 Striga asiatica HOM05D000424 ORTHO05D000355 2.7e-21 105.9 89 57.3
CAN.G1476.6 Capsicum annuum HOM05D000424 ORTHO05D000355 3.5e-21 105.5 70 81.4
Lj3P731T23 Lonicera japonica HOM05D000424 ORTHO05D000355 6.6e-20 101.3 92 56.5
RcHm_v2.0_Chr4g0386551 Rosa chinensis HOM05D001876 ORTHO05D002002 1.8e-14 83.2 79 50.6
Cc03_g04090 Coffea canephora HOM05D000424 ORTHO05D000355 5.4e-14 81.6 76 56.6
SHI00491 Sapria himalayana HOM05D000424 ORTHO05D000355 9.2e-14 80.9 90 46.7
BcaB04g20505 Brassica carinata HOM05D000424 ORTHO05D039391 1.0e-12 77.4 118 40.7
Oeu028579.1 Olea europaea HOM05D000424 ORTHO05D000355 1.7e-12 76.6 64 62.5
PGR119G1668 Punica granatum HOM05D000424 ORTHO05D008586 2.9e-12 75.9 139 35.3
RcHm_v2.0_Chr1g0322101 Rosa chinensis HOM05D000424 ORTHO05D008586 6.6e-12 74.7 72 47.2
Aqoxy5G03537 Aquilegia oxysepala HOM05D000424 ORTHO05D008586 1.9e-11 73.2 133 36.8
TAR374G1548 Trochodendron aralioides HOM05D000424 ORTHO05D008586 1.9e-11 73.2 128 40.6
Haze_12359 Corylus avellana HOM05D000424 ORTHO05D008586 2.5e-11 72.8 126 37.3
Cc02_g24080 Coffea canephora HOM05D000424 ORTHO05D008586 3.3e-11 72.4 133 37.6
Cpa.g.sc43.5 Carica papaya HOM05D000424 ORTHO05D008586 4.3e-11 72.0 132 34.1
FAN04G2222 Fragaria x ananassa HOM05D000424 ORTHO05D008586 7.3e-11 71.2 129 37.2
COL.COLO4_23614 Corchorus olitorius HOM05D000424 ORTHO05D008586 9.5e-11 70.9 119 36.1
RcHm_v2.0_Chr7g0223501 Rosa chinensis HOM05D000424 ORTHO05D008586 9.5e-11 70.9 101 42.6
Nn3g18338 Nelumbo nucifera HOM05D000424 ORTHO05D008586 1.2e-10 70.5 133 36.8
Thecc.02G273600 Theobroma cacao HOM05D000424 ORTHO05D008586 1.6e-10 70.1 122 35.2
Haze_12363 Corylus avellana HOM05D000424 ORTHO05D008586 2.1e-10 69.7 126 36.5
FAN12G1611 Fragaria x ananassa HOM05D000424 ORTHO05D008586 2.1e-10 69.7 129 37.2
CAN.G1038.8 Capsicum annuum HOM05D000424 ORTHO05D008586 2.8e-10 69.3 133 33.8
FvH4_4g36630 Fragaria vesca HOM05D000424 ORTHO05D008586 2.8e-10 69.3 129 37.2
Lalb_Chr12g0210351 Lupinus albus HOM05D000424 ORTHO05D008586 2.8e-10 69.3 129 34.1
TPR.G38275 Trifolium pratense HOM05D000424 ORTHO05D008586 2.8e-10 69.3 121 38.8
VMungo1215G2887 Vigna mungo HOM05D000879 ORTHO05D002043 2.8e-10 69.3 129 34.1
FAN13G0831 Fragaria x ananassa HOM05D000424 ORTHO05D008586 3.6e-10 68.9 129 37.2
FvH4_5g29890 Fragaria vesca HOM05D000424 ORTHO05D008586 4.7e-10 68.6 129 37.2
HPP92_008081 Vanilla planifolia HOM05D000424 ORTHO05D008586 6.1e-10 68.2 131 32.8
CANSAT01G2133 Cannabis sativa HOM05D000424 ORTHO05D008586 8.0e-10 67.8 129 36.4
Hma1.2p1_0856F.1_g229090 Hydrangea macrophylla HOM05D000424 ORTHO05D008586 8.0e-10 67.8 136 31.6
Dinv10995 Davidia involucrata HOM05D000424 ORTHO05D008586 1.0e-09 67.4 133 34.6
HanXRQChr08g0207431 Helianthus annuus HOM05D000424 ORTHO05D008586 1.0e-09 67.4 133 36.8
Nitab4.5_0001898g0020 Nicotiana tabacum HOM05D000424 ORTHO05D008586 1.4e-09 67.0 133 33.8
Prupe.3G105000 Prunus persica HOM05D000424 ORTHO05D008586 1.8e-09 66.6 129 36.4
AUR62024165 Chenopodium quinoa HOM05D000424 ORTHO05D008586 2.3e-09 66.2 126 33.3
Sc11g0000690 Simmondsia chinensis HOM05D000424 ORTHO05D008586 2.3e-09 66.2 133 33.8
THA.LOC104805256 Tarenaya hassleriana HOM05D000424 ORTHO05D008586 3.1e-09 65.9 128 32.8
Atru.chr11.2237 Acer truncatum HOM05D000424 ORTHO05D008586 4.0e-09 65.5 129 36.4
MSTRG.21866 Avicennia marina HOM05D000424 ORTHO05D000355 4.0e-09 65.5 63 52.4
Medtr7g029515 Medicago truncatula HOM05D000424 ORTHO05D008586 4.0e-09 65.5 129 34.9
Migut.N00201 Erythranthe guttata HOM05D000424 ORTHO05D000355 6.8e-09 64.7 61 49.2
PGSC0003DMG400017435 Solanum tuberosum HOM05D000424 ORTHO05D008586 6.8e-09 64.7 136 33.1
Aa31LG5G14670 Aethionema arabicum HOM05D000424 ORTHO05D008586 8.9e-09 64.3 132 31.8
Ciclev10005379m.g Citrus clementina HOM05D000424 ORTHO05D000355 1.2e-08 63.9 134 33.6
Lj5g0012330 Lotus japonicus HOM05D000424 ORTHO05D008586 1.2e-08 63.9 129 34.9
SalBow2G1939 Salvia bowleyana HOM05D000424 ORTHO05D008586 1.2e-08 63.9 132 31.8
Lj6g0011408 Lotus japonicus HOM05D000424 ORTHO05D008586 1.5e-08 63.5 129 34.9
AT3G04130 Arabidopsis thaliana HOM05D000424 ORTHO05D008586 2.0e-08 63.2 132 31.1
Carub.0003s0338 Capsella rubella HOM05D000424 ORTHO05D008586 2.0e-08 63.2 132 31.8
CiPaw.05G116100 Carya illinoinensis HOM05D000424 ORTHO05D008586 2.0e-08 63.2 109 38.5
Sed0028237 Sechium edule HOM05D000424 ORTHO05D008586 2.0e-08 63.2 129 34.1
AL3G14040 Arabidopsis lyrata HOM05D000424 ORTHO05D008586 2.6e-08 62.8 132 31.1
arahy.Tifrunner.gnm1.ann1.5FY1X2 Arachis hypogaea HOM05D000424 ORTHO05D008586 3.4e-08 62.4 129 31.0
arahy.Tifrunner.gnm1.ann1.QBYX8U Arachis hypogaea HOM05D000424 ORTHO05D008586 3.4e-08 62.4 129 31.0
CSS0001753 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 4.4e-08 62.0 133 33.1
MSTRG.7975 Avicennia marina HOM05D000424 ORTHO05D008586 5.8e-08 61.6 133 29.3
Cfa009309 Carpinus fangiana HOM05D000424 ORTHO05D008586 5.8e-08 61.6 127 34.6
Sopen05g009570 Solanum pennellii HOM05D000424 ORTHO05D008586 5.8e-08 61.6 133 31.6
CSS0034881 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 7.5e-08 61.2 133 33.1
Rhsim12G0106100 Rhododendron simsii HOM05D000424 ORTHO05D008586 9.8e-08 60.8 132 31.1
Solyc05g014490.3 Solanum lycopersicum HOM05D000424 ORTHO05D008586 9.8e-08 60.8 133 32.3
TWI53G1953 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 1.3e-07 60.5 129 31.8
Ah.03g133830 Amaranthus hybridus HOM05D000424 ORTHO05D008586 2.2e-07 59.7 135 29.6
DCAR_030676 Daucus carota HOM05D000424 ORTHO05D000355 2.2e-07 59.7 53 58.5
Medtr1g056160 Medicago truncatula HOM05D000424 ORTHO05D008586 2.2e-07 59.7 129 35.7
Zm00001eb246390 Zea mays HOM05D000424 ORTHO05D008586 2.2e-07 59.7 124 29.8
ECA236G4718 Erigeron canadensis HOM05D000424 ORTHO05D000355 2.9e-07 59.3 52 55.8
Phvul.001G095200 Phaseolus vulgaris HOM05D000424 ORTHO05D008586 2.9e-07 59.3 132 31.1
SGA_v2.0_scaffold34G13606 Striga asiatica HOM05D000424 ORTHO05D008586 2.9e-07 59.3 133 31.6
Atru.chr4.2419 Acer truncatum HOM05D000424 ORTHO05D000355 3.7e-07 58.9 134 30.6
Atru.ctg752_3.32 Acer truncatum HOM05D000424 ORTHO05D000355 3.7e-07 58.9 134 30.6
CARHR078260 Cardamine hirsuta HOM05D000424 ORTHO05D008586 3.7e-07 58.9 132 30.3
Cc02_g29420 Coffea canephora HOM05D007173 ORTHO05D009151 3.7e-07 58.9 119 32.8
Os08g0369200 Oryza sativa ssp. japonica HOM05D007173 ORTHO05D009151 4.9e-07 58.5 117 35.0
FAN08G2598 Fragaria x ananassa HOM05D000424 ORTHO05D000355 6.4e-07 58.2 119 27.7
Dinv44566 Davidia involucrata HOM05D000424 ORTHO05D000355 8.3e-07 57.8 49 57.1
ECA233G0630 Erigeron canadensis HOM05D000424 ORTHO05D008586 8.3e-07 57.8 116 33.6
EL10Ac6g13428 Beta vulgaris HOM05D000424 ORTHO05D008586 1.1e-06 57.4 125 31.2
Gohir.A03G129100 Gossypium hirsutum HOM05D000424 ORTHO05D008586 1.4e-06 57.0 116 34.5
Gohir.D02G152900 Gossypium hirsutum HOM05D000424 ORTHO05D008586 1.4e-06 57.0 116 34.5
Medtr7g005780 Medicago truncatula HOM05D000424 ORTHO05D008586 1.4e-06 57.0 102 39.2
Os02g0601600 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D008586 1.4e-06 57.0 128 31.2
Eucgr.H05146 Eucalyptus grandis HOM05D007173 ORTHO05D009151 1.9e-06 56.6 118 30.5
Lsat_1_v5_gn_8_151840 Lactuca sativa HOM05D000424 ORTHO05D008586 1.9e-06 56.6 133 33.1
Oeu020314.1 Olea europaea HOM05D000424 ORTHO05D008586 2.4e-06 56.2 133 27.8
MD17G1227800 Malus domestica HOM05D000424 ORTHO05D008586 3.2e-06 55.8 129 32.6
MD17G1228100 Malus domestica HOM05D000424 ORTHO05D008586 3.2e-06 55.8 129 32.6
Gorai.005G172000 Gossypium raimondii HOM05D000424 ORTHO05D008586 4.1e-06 55.5 118 33.1
MELO3C010658.2 Cucumis melo HOM05D000424 ORTHO05D000355 7.0e-06 54.7 121 25.6
Migut.K00691 Erythranthe guttata HOM05D000424 ORTHO05D008586 7.0e-06 54.7 133 31.6
Potri.008G179201 Populus trichocarpa HOM05D000424 ORTHO05D008586 7.0e-06 54.7 128 29.7
Ciclev10031257m.g Citrus clementina HOM05D000424 ORTHO05D008586 9.2e-06 54.3 129 29.5


User provided reference genes

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