Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.0e-219 765.4 373 100.0
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.1e-175 620.2 373 82.8
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 3.0e-162 575.5 378 77.8
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 6.3e-160 567.8 375 75.7
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.4e-159 566.6 373 77.5
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 1.2e-150 537.0 402 69.7
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 7.5e-113 411.4 395 57.7
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 7.3e-108 394.8 366 56.0
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.6e-107 393.7 371 55.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 4.9e-104 382.1 375 55.2
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.3e-101 373.2 368 54.9
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 7.3e-100 368.2 378 52.4
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 4.0e-98 362.5 368 53.3
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 8.9e-98 361.3 402 50.5
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 2.6e-97 359.8 367 51.2
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 5.8e-97 358.6 373 52.8
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 7.5e-97 358.2 379 51.2
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 7.5e-97 358.2 376 52.4
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.2e-96 356.7 366 53.3
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.9e-96 355.5 336 56.5
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 6.4e-96 355.1 368 52.4
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.4e-95 354.0 352 52.6
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.9e-95 353.6 330 55.8
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.9e-95 353.6 364 51.9
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 3.2e-95 352.8 373 50.4
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 3.2e-95 352.8 371 51.8
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 4.1e-95 352.4 362 51.1
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 2.1e-94 350.1 346 53.8
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 2.7e-94 349.7 340 53.2
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 7.8e-94 348.2 370 51.4
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.0e-93 347.8 328 54.3
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.7e-93 347.1 336 54.2
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 3.9e-93 345.9 368 50.3
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 1.1e-92 344.4 370 50.0
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 1.5e-92 344.0 348 52.6
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.9e-92 343.6 371 50.1
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.9e-92 343.6 349 53.0
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.5e-92 343.2 366 48.6
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 5.6e-92 342.0 368 49.5
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 7.3e-92 341.7 377 49.1
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.3e-92 341.7 371 49.1
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 9.5e-92 341.3 346 54.6
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 6.2e-91 338.6 368 48.1
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 8.1e-91 338.2 370 49.7
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.1e-91 338.2 365 48.8
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.1e-91 338.2 365 48.8
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.4e-90 337.4 356 50.8
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.8e-90 337.0 371 48.0
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 8.9e-90 334.7 362 50.6
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 8.9e-90 334.7 362 48.1
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 8.9e-90 334.7 365 49.0
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.5e-89 334.0 297 53.5
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 1.5e-89 334.0 366 48.6
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 2.0e-89 333.6 369 50.1
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.6e-89 333.2 366 47.5
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.4e-89 332.8 336 51.8
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.3e-88 330.9 371 50.7
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.7e-88 330.5 361 51.2
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 1.7e-88 330.5 372 50.3
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 2.2e-88 330.1 331 52.9
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 2.9e-88 329.7 370 50.5
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 8.4e-88 328.2 371 50.7
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.1e-87 327.8 385 46.5
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.4e-87 327.4 337 52.8
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.4e-87 327.4 385 46.2
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.9e-87 327.0 336 51.2
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.2e-87 326.2 336 51.5
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 3.2e-87 326.2 373 50.1
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 4.1e-87 325.9 373 50.7
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 7.1e-87 325.1 375 48.8
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 1.2e-86 324.3 376 48.1
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.7e-86 323.2 367 49.3
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 6.0e-86 322.0 402 46.3
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.0e-85 321.2 365 47.7
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.7e-85 320.5 373 49.9
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 3.9e-85 319.3 378 48.1
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 5.1e-85 318.9 362 47.0
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 6.6e-85 318.5 304 53.9
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 8.7e-85 318.2 364 48.6
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 1.1e-84 317.8 371 47.7
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 1.1e-84 317.8 371 47.7
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 4.3e-84 315.8 362 48.9
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 4.3e-84 315.8 369 48.8
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 7.3e-84 315.1 362 48.6
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 1.6e-83 313.9 364 48.4
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.8e-83 313.2 376 47.3
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.8e-83 313.2 326 50.0
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 8.1e-83 311.6 365 48.5
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 1.1e-82 311.2 376 46.8
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.8e-82 310.5 362 48.3
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 6.9e-82 308.5 365 47.4
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 6.9e-82 308.5 347 49.3
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.2e-81 307.8 353 49.9
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.5e-81 307.4 373 47.2
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 2.6e-81 306.6 366 47.3
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 2.6e-81 306.6 377 46.4
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 3.4e-81 306.2 285 55.4
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 3.4e-81 306.2 257 60.3
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 4.4e-81 305.8 297 50.5
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 4.4e-81 305.8 330 49.7
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 4.4e-81 305.8 298 54.0
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 4.4e-81 305.8 356 48.3
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 9.9e-81 304.7 336 50.9
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 9.9e-81 304.7 329 51.4
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 9.9e-81 304.7 302 50.0
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 6.4e-80 302.0 343 49.3
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 5.4e-79 298.9 298 52.0
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 7.1e-79 298.5 329 48.9
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 1.2e-78 297.7 365 46.0
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.6e-77 292.0 357 44.5
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 5.6e-76 288.9 274 54.4
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 2.4e-74 283.5 332 48.2
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 4.5e-73 279.3 285 53.7
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 8.7e-69 265.0 381 43.8
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.3e-67 261.2 316 46.2
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 1.2e-65 254.6 332 42.8
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 8.4e-64 248.4 301 44.2
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.3e-61 241.1 247 51.4
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 3.9e-61 239.6 267 48.3
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.1e-60 238.0 379 41.2
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.3e-60 236.5 283 46.3
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 7.4e-60 235.3 246 52.0
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 7.6e-57 225.3 246 50.8
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.1e-54 217.2 282 42.2
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.1e-54 217.2 282 42.2
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.8e-53 214.2 243 48.6
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.9e-52 210.7 285 40.4
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 2.5e-52 210.3 156 64.7
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 7.4e-52 208.8 164 63.4
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.7e-51 206.5 137 67.9
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.8e-50 204.1 318 35.2
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 1.5e-49 201.1 248 44.4
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.2e-47 192.2 262 42.4
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 8.8e-45 185.3 126 69.8
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 7.4e-44 182.2 331 36.6
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.8e-42 177.6 116 72.4
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 5.3e-42 176.0 301 34.9
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.9e-40 170.2 241 41.5
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.8e-40 169.9 167 55.1
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.2e-39 165.6 258 39.1
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 7.2e-31 139.0 180 42.8
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 2.1e-30 137.5 130 53.1
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.1e-30 137.5 98 64.3
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 5.7e-28 129.4 130 50.8
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 7.0e-26 122.5 137 46.0
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 1.2e-20 105.1 170 42.4
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 3.7e-19 100.1 100 50.0
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.8e-19 99.8 306 27.5
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.3e-18 96.3 72 61.1
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 9.1e-18 95.5 86 51.2
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 3.2e-15 87.0 70 57.1
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.6e-14 84.7 119 44.5
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.0e-13 82.0 76 56.6
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 2.6e-12 77.4 81 51.9
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 2.4e-10 70.9 36 86.1
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 1.6e-06 58.2 40 62.5


User provided reference genes

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