Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.1e-108 394.8 211 100.0
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.4e-102 375.2 211 95.3
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 6.2e-88 327.8 211 84.8
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 4.6e-83 311.6 212 80.2
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 8.9e-79 297.4 209 79.4
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 2.4e-76 289.3 198 80.3
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 4.8e-72 275.0 210 72.9
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 4.0e-71 271.9 209 73.2
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 6.9e-71 271.2 209 73.7
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 7.6e-70 267.7 211 72.5
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 2.3e-66 256.1 209 67.0
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 4.0e-63 245.4 207 68.1
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 1.5e-62 243.4 209 66.0
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 3.4e-62 242.3 209 67.5
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.8e-62 241.5 209 64.6
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.8e-62 241.5 209 64.6
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 1.7e-61 240.0 185 73.0
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 8.4e-61 237.7 213 64.8
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 1.1e-60 237.3 207 64.7
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 9.3e-60 234.2 209 64.6
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 9.3e-60 234.2 209 64.6
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 2.5e-57 226.1 209 65.6
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 2.8e-56 222.6 209 65.6
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 2.4e-55 219.5 209 63.2
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 5.3e-55 218.4 209 56.5
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 1.2e-54 217.2 204 59.3
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.5e-54 216.9 210 62.9
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 4.5e-54 215.3 207 64.3
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.3e-53 213.8 182 68.7
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 2.2e-53 213.0 207 60.4
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 2.9e-53 212.6 210 62.9
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 2.9e-53 212.6 210 62.9
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 2.9e-53 212.6 209 59.3
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 6.5e-53 211.5 204 61.8
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 1.9e-52 209.9 208 63.9
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.9e-52 209.9 204 61.3
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 7.1e-52 208.0 209 61.2
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 7.1e-52 208.0 207 54.6
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 1.6e-51 206.8 207 63.3
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 3.5e-51 205.7 209 62.2
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 3.5e-51 205.7 207 58.5
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 6.0e-51 204.9 210 62.4
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.3e-50 203.8 209 58.4
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 8.7e-50 201.1 212 62.3
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 1.1e-49 200.7 199 65.8
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.3e-49 199.1 209 57.9
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 7.4e-49 198.0 209 59.3
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.6e-48 196.8 209 57.9
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 2.1e-48 196.4 207 59.4
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 5.3e-47 191.8 209 57.9
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 1.2e-46 190.7 209 60.3
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.5e-46 190.3 206 60.2
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.3e-45 187.2 210 54.3
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 2.2e-45 186.4 211 56.9
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.1e-44 184.1 208 58.2
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.2e-44 182.2 208 57.2
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 4.2e-44 182.2 208 57.2
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 5.5e-44 181.8 195 53.8
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 6.1e-43 178.3 201 54.7
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 2.3e-42 176.4 206 51.5
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 6.7e-42 174.9 211 56.4
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 8.7e-42 174.5 206 51.0
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.1e-41 174.1 211 56.4
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.5e-41 173.7 211 57.3
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.7e-41 171.8 213 56.8
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 5.7e-41 171.8 204 52.9
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 7.4e-41 171.4 206 52.9
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 1.3e-40 170.6 210 52.9
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.6e-40 170.2 210 51.9
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 6.3e-40 168.3 205 52.7
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 8.2e-40 167.9 209 52.6
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 1.4e-39 167.2 199 54.8
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 2.4e-39 166.4 196 55.6
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 9.0e-39 164.5 204 50.0
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 1.5e-38 163.7 212 53.8
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 2.6e-38 162.9 205 55.1
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 3.4e-38 162.5 208 51.4
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 5.9e-38 161.8 206 55.8
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.2e-37 159.8 208 56.2
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.9e-37 159.5 208 56.2
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 2.9e-37 159.5 212 50.5
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 5.0e-37 158.7 203 50.2
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.5e-37 157.9 208 55.8
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 1.9e-36 156.8 211 49.8
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 2.5e-36 156.4 210 51.0
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 3.2e-36 156.0 205 54.1
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 5.5e-36 155.2 197 54.3
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 5.5e-36 155.2 213 56.8
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 7.2e-36 154.8 204 51.5
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 7.2e-36 154.8 204 51.5
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.2e-35 154.1 197 53.8
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.1e-35 153.3 197 55.3
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 2.7e-35 152.9 214 50.9
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 6.1e-35 151.8 204 51.0
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 7.9e-35 151.4 190 54.2
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 1.0e-34 151.0 194 54.6
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 1.4e-34 150.6 207 53.6
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.3e-34 149.8 194 49.5
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 2.3e-34 149.8 212 48.6
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.1e-34 148.7 214 49.1
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 8.8e-34 147.9 197 54.3
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.1e-33 147.5 207 46.4
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 2.0e-33 146.7 145 52.4
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 2.0e-33 146.7 214 49.1
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.0e-33 146.7 214 48.6
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.0e-33 146.7 214 49.1
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 2.0e-33 146.7 211 47.9
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.3e-33 145.6 214 49.1
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 7.4e-33 144.8 208 45.2
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 9.7e-33 144.4 214 48.6
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 1.3e-32 144.1 185 47.0
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 2.8e-32 142.9 218 47.7
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 3.7e-32 142.5 208 46.6
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 4.8e-32 142.1 206 48.1
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 4.8e-32 142.1 203 46.3
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 6.3e-32 141.7 208 47.1
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 1.1e-31 141.0 198 45.5
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 1.1e-31 141.0 198 46.0
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.1e-31 141.0 208 45.2
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 3.1e-31 139.4 208 46.2
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 3.1e-31 139.4 212 43.4
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.1e-31 139.4 197 50.3
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 4.1e-31 139.0 208 45.7
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 9.1e-31 137.9 260 38.8
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 9.1e-31 137.9 205 47.3
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 2.0e-30 136.7 195 46.2
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 2.6e-30 136.3 208 44.2
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 7.7e-30 134.8 195 49.2
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 7.7e-30 134.8 205 51.2
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 7.7e-30 134.8 204 50.5
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.3e-29 134.0 119 72.3
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.7e-29 133.7 192 53.1
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 2.9e-29 132.9 200 44.0
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 2.9e-29 132.9 209 43.5
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 5.0e-29 132.1 206 43.7
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 6.5e-29 131.7 207 45.9
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 1.1e-28 131.0 204 50.0
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 1.4e-28 130.6 212 49.1
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 1.9e-28 130.2 208 43.3
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 2.5e-28 129.8 206 47.1
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 3.2e-28 129.4 209 44.0
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 9.4e-28 127.9 211 43.1
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 9.4e-28 127.9 204 47.5
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 2.1e-27 126.7 200 47.0
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 4.7e-27 125.6 210 42.9
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 6.1e-27 125.2 208 43.3
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 6.1e-27 125.2 204 47.5
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 2.3e-26 123.2 205 49.3
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 3.0e-26 122.9 200 46.0
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 2.6e-25 119.8 210 41.4
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 3.3e-25 119.4 193 47.2
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 3.3e-25 119.4 199 42.7
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 3.3e-25 119.4 220 46.4
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 1.3e-24 117.5 200 46.0
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 2.8e-24 116.3 204 48.5
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 3.7e-24 115.9 211 42.7
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 4.8e-24 115.5 149 45.6
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 9.1e-23 111.3 207 44.4
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.5e-22 110.5 195 44.6
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 4.5e-22 109.0 128 43.8
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 4.5e-22 109.0 195 43.1
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.8e-21 105.9 214 40.7
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 1.1e-20 104.4 238 39.1
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 1.5e-20 104.0 133 57.9
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 1.5e-20 104.0 197 44.7
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.5e-20 103.2 165 46.7
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 9.4e-20 101.3 222 42.8
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.6e-19 100.5 185 43.8
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 1.8e-18 97.1 130 52.3
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 1.8e-18 97.1 130 52.3
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 1.8e-18 97.1 188 44.7
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 2.6e-17 93.2 214 43.0
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 2.6e-17 93.2 127 57.5
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 3.3e-17 92.8 201 41.8
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 1.7e-16 90.5 91 71.4
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 3.7e-16 89.4 204 41.2
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 6.3e-16 88.6 213 42.7
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.1e-15 87.8 84 60.7
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 3.1e-15 86.3 118 55.1
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 2.9e-13 79.7 131 41.2
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 3.8e-13 79.3 72 66.7
Lj8C18T8 Lonicera japonica HOM05D002831 ORTHO05D004341 5.0e-13 79.0 212 42.0
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 3.2e-12 76.3 210 39.5
Nn1g01625 Nelumbo nucifera HOM05D002831 ORTHO05D004341 3.4e-09 66.2 51 76.5
Pp3c26_7830 Physcomitrium patens HOM05D040812 ORTHO05D031180 6.3e-08 62.0 202 36.1
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 2.7e-06 56.6 93 53.8


User provided reference genes

Program Settings