Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 2.8e-42 174.9 87 100.0
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 2.0e-16 89.0 94 54.3
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 1.7e-15 85.9 43 95.3
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 1.7e-15 85.9 43 95.3
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 1.9e-14 82.4 43 90.7
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 3.6e-10 68.2 61 60.7
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 4.0e-09 64.7 39 84.6
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 4.0e-09 64.7 39 84.6
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 4.0e-09 64.7 65 60.0
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 1.2e-08 63.2 34 91.2
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 1.5e-08 62.8 41 75.6
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 1.5e-08 62.8 45 75.6
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 2.0e-08 62.4 43 74.4
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 3.4e-08 61.6 77 46.8
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 5.8e-08 60.8 46 69.6
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 5.8e-08 60.8 43 72.1
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 1.3e-07 59.7 53 62.3
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 1.3e-07 59.7 46 67.4
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 1.7e-07 59.3 45 68.9
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 1.7e-07 59.3 40 75.0
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 1.7e-07 59.3 45 68.9
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 1.7e-07 59.3 61 55.7
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 1.7e-07 59.3 40 72.5
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 2.2e-07 58.9 39 76.9
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 2.9e-07 58.5 40 77.5
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 2.9e-07 58.5 53 62.3
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 2.9e-07 58.5 40 75.0
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 3.8e-07 58.2 43 67.4
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 3.8e-07 58.2 43 69.8
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 3.8e-07 58.2 27 92.6
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 4.9e-07 57.8 56 58.9
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 4.9e-07 57.8 43 67.4
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 4.9e-07 57.8 38 76.3
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 6.4e-07 57.4 40 70.0
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 6.4e-07 57.4 38 73.7
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 8.4e-07 57.0 43 65.1
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 8.4e-07 57.0 43 62.8
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 1.1e-06 56.6 45 64.4
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 1.4e-06 56.2 27 88.9
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 1.4e-06 56.2 27 88.9
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 1.4e-06 56.2 53 58.5
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 1.4e-06 56.2 27 88.9
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.4e-06 56.2 27 88.9
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.4e-06 56.2 27 88.9
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 1.4e-06 56.2 27 88.9
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 1.4e-06 56.2 27 88.9
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 1.4e-06 56.2 27 88.9
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 1.4e-06 56.2 41 73.2
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 2.4e-06 55.5 43 65.1
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 2.4e-06 55.5 38 73.7
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 5.4e-06 54.3 52 59.6
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 5.4e-06 54.3 52 59.6
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 7.1e-06 53.9 40 70.0


User provided reference genes

Program Settings