Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.4e-190 669.5 351 100.0
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 6.0e-104 381.7 364 59.6
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 7.8e-104 381.3 360 59.4
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 3.0e-103 379.4 340 60.0
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 3.1e-100 369.4 355 56.6
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 7.6e-99 364.8 355 57.2
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 1.1e-97 360.9 356 56.5
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 7.1e-97 358.2 357 55.2
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 5.1e-95 352.1 358 57.0
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 3.3e-94 349.4 363 55.6
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 2.4e-92 343.2 360 56.9
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.5e-91 340.5 374 53.7
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.0e-87 327.8 289 60.9
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.8e-87 327.0 360 52.5
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.5e-86 323.9 347 54.8
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.9e-86 323.6 357 50.1
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 4.3e-86 322.4 351 55.0
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 6.2e-85 318.5 291 58.4
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 6.2e-85 318.5 344 55.5
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 4.0e-84 315.8 362 48.6
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 9.0e-84 314.7 359 48.7
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.2e-83 314.3 362 50.0
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 2.0e-83 313.5 360 51.7
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 1.7e-82 310.5 368 51.6
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 3.8e-82 309.3 362 48.9
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 6.5e-82 308.5 363 49.3
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 3.2e-81 306.2 364 49.5
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 9.3e-81 304.7 361 49.3
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.5e-80 302.8 371 48.2
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 6.0e-80 302.0 362 50.0
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 6.0e-80 302.0 361 49.0
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 8.7e-79 298.1 368 47.3
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.1e-78 297.7 361 48.8
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 2.5e-78 296.6 366 49.2
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 3.3e-78 296.2 361 48.8
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 5.7e-78 295.4 363 48.8
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 9.6e-78 294.7 363 47.9
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.6e-77 293.9 365 47.7
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.1e-77 293.5 358 47.5
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 2.1e-77 293.5 367 48.8
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.8e-77 293.1 363 49.6
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 4.8e-77 292.4 370 46.8
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 6.2e-77 292.0 366 48.6
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 3.1e-76 289.7 373 48.5
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 4.1e-76 289.3 358 46.9
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.3e-76 288.9 358 46.9
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 1.3e-74 284.3 360 46.7
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 3.8e-74 282.7 362 46.7
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 5.0e-74 282.3 363 46.3
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 5.0e-74 282.3 367 45.2
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.4e-73 280.8 363 46.6
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.4e-73 280.8 367 47.4
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 4.2e-73 279.3 295 50.8
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 5.5e-73 278.9 363 46.3
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 5.5e-73 278.9 368 47.8
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 7.1e-73 278.5 366 45.6
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 2.7e-72 276.6 359 48.7
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 2.7e-72 276.6 367 45.5
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 6.1e-72 275.4 362 45.3
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 7.9e-72 275.0 365 48.2
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.3e-71 274.2 357 44.8
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 3.0e-71 273.1 295 51.9
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 3.9e-71 272.7 400 44.2
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 3.9e-71 272.7 351 45.3
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 5.1e-71 272.3 359 45.7
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.5e-70 270.8 362 45.9
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.9e-70 270.4 364 45.1
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.3e-70 269.6 362 45.3
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.3e-70 269.2 371 46.1
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 4.3e-70 269.2 362 45.3
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.7e-70 268.9 371 44.7
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 1.6e-69 267.3 363 46.8
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 1.4e-68 264.2 362 44.8
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.4e-68 264.2 361 44.9
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 3.1e-68 263.1 371 44.5
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 4.1e-68 262.7 365 45.5
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 5.3e-68 262.3 366 43.7
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 5.3e-68 262.3 360 44.7
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.9e-68 261.9 365 45.8
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 9.0e-68 261.5 365 43.0
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 7.7e-67 258.5 358 45.3
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 7.7e-67 258.5 363 43.0
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 7.7e-67 258.5 361 43.8
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.0e-66 258.1 358 45.0
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 1.0e-66 258.1 362 45.6
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.3e-66 257.7 359 45.7
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.7e-66 257.3 372 44.9
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 2.2e-66 256.9 285 54.0
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 2.2e-66 256.9 371 45.6
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 6.5e-66 255.4 364 42.9
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 6.5e-66 255.4 357 43.7
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.4e-65 254.2 402 41.5
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 2.5e-65 253.4 363 43.5
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 3.2e-65 253.1 362 42.5
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 3.2e-65 253.1 362 42.5
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 3.2e-65 253.1 362 42.5
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 3.2e-65 253.1 362 44.5
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 5.5e-65 252.3 362 42.5
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.2e-64 251.1 364 42.6
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.6e-64 250.8 363 42.4
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 2.1e-64 250.4 370 44.1
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 2.1e-64 250.4 347 45.2
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 2.7e-64 250.0 344 44.8
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 2.7e-64 250.0 374 42.5
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 2.7e-64 250.0 366 41.5
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.6e-64 249.2 342 45.3
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 7.9e-64 248.4 344 44.5
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 6.7e-63 245.4 310 48.1
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 6.7e-63 245.4 369 42.3
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 3.3e-62 243.0 359 41.8
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.3e-61 241.1 377 40.8
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 2.2e-61 240.4 374 40.6
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 2.8e-61 240.0 364 40.9
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 3.7e-61 239.6 357 43.1
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 3.7e-61 239.6 357 43.1
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 8.2e-61 238.4 362 41.7
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 8.2e-61 238.4 301 46.5
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 8.2e-61 238.4 301 46.5
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 8.2e-61 238.4 301 46.5
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.4e-60 237.7 369 42.3
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 9.1e-60 235.0 219 59.8
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 3.4e-59 233.0 369 42.5
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 4.5e-59 232.6 381 39.4
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 2.9e-58 229.9 366 41.5
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.2e-57 226.1 319 44.5
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 7.2e-57 225.3 370 41.4
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 9.4e-57 224.9 361 41.0
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.6e-56 224.2 317 43.8
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.1e-56 223.8 297 42.4
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 2.1e-56 223.8 362 42.3
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.8e-55 220.7 331 41.1
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 1.1e-54 218.0 360 39.7
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 4.1e-52 209.5 302 42.7
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 3.5e-51 206.5 366 39.1
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.0e-50 204.9 345 40.6
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.2e-49 199.5 189 57.7
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 6.7e-47 192.2 286 40.9
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.7e-45 186.4 287 39.0
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.7e-40 170.2 437 31.4
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.7e-40 170.2 437 31.4
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 4.0e-39 166.4 355 33.2
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.4e-36 156.0 182 49.5
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.6e-35 154.5 182 49.5
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.3e-31 140.6 342 29.8
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.0e-28 129.0 217 36.9
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.0e-27 127.5 212 36.3
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.7e-27 125.6 326 28.2
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.1e-24 115.9 387 25.8
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.0e-23 113.6 354 26.6
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.3e-21 108.2 202 33.2
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 4.1e-20 103.2 263 28.5
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 3.9e-18 96.7 423 25.1
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 5.0e-18 96.3 233 26.6
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 5.0e-18 96.3 132 42.4
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.1e-17 95.1 385 24.2
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 4.3e-17 93.2 127 43.3
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 3.0e-10 70.5 67 55.2
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 6.6e-10 69.3 71 50.7
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.2e-08 65.1 69 44.9
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 3.4e-06 57.0 85 36.5


User provided reference genes

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