Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 8.9e-69 263.5 131 100.0
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 1.2e-49 199.9 121 83.5
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 1.6e-49 199.5 120 84.2
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 2.1e-49 199.1 100 95.0
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 3.5e-49 198.4 100 94.0
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 3.5e-49 198.4 120 83.3
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 4.6e-49 198.0 100 94.0
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 4.6e-49 198.0 120 82.5
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 6.0e-49 197.6 121 82.6
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 6.0e-49 197.6 121 81.8
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 7.8e-49 197.2 120 81.7
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 7.8e-49 197.2 100 93.0
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 7.8e-49 197.2 120 82.5
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 1.0e-48 196.8 120 82.5
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.0e-48 196.8 100 93.0
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.0e-48 196.8 100 93.0
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 1.0e-48 196.8 100 93.0
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 1.3e-48 196.4 120 82.5
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.3e-48 196.4 120 82.5
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 1.3e-48 196.4 120 82.5
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 1.3e-48 196.4 120 82.5
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 1.7e-48 196.1 118 83.1
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 1.7e-48 196.1 120 82.5
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 1.7e-48 196.1 120 80.8
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 1.7e-48 196.1 100 92.0
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 1.7e-48 196.1 120 81.7
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 2.3e-48 195.7 121 81.8
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 2.3e-48 195.7 100 92.0
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 2.3e-48 195.7 100 93.0
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 3.0e-48 195.3 120 80.0
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 3.0e-48 195.3 120 82.5
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 3.9e-48 194.9 120 81.7
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 3.9e-48 194.9 120 81.7
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 3.9e-48 194.9 121 81.8
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 3.9e-48 194.9 120 80.0
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 3.9e-48 194.9 121 80.2
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 3.9e-48 194.9 100 92.0
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 5.1e-48 194.5 120 80.8
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 6.6e-48 194.1 100 91.0
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 6.6e-48 194.1 100 91.0
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 6.6e-48 194.1 100 91.0
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 8.6e-48 193.7 120 81.7
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 8.6e-48 193.7 120 81.7
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 8.6e-48 193.7 100 92.0
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 8.6e-48 193.7 100 90.0
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 8.6e-48 193.7 121 80.2
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 8.6e-48 193.7 120 81.7
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 1.1e-47 193.4 120 80.0
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 1.1e-47 193.4 120 81.7
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 1.5e-47 193.0 100 90.0
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 1.5e-47 193.0 120 80.8
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.5e-47 193.0 100 89.0
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.5e-47 193.0 100 89.0
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 1.9e-47 192.6 120 80.8
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 2.5e-47 192.2 100 91.0
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 2.5e-47 192.2 100 91.0
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 3.3e-47 191.8 131 71.8
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 3.3e-47 191.8 120 80.8
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.3e-47 191.8 100 88.0
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 3.3e-47 191.8 120 80.0
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 3.3e-47 191.8 120 80.0
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 4.3e-47 191.4 100 89.0
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 4.3e-47 191.4 121 78.5
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 4.3e-47 191.4 100 87.0
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 5.6e-47 191.0 121 79.3
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 7.3e-47 190.7 100 88.0
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 7.3e-47 190.7 100 89.0
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 7.3e-47 190.7 100 88.0
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 7.3e-47 190.7 120 79.2
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 9.6e-47 190.3 121 77.7
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.2e-46 189.9 120 80.0
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.2e-46 189.9 100 88.0
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 1.2e-46 189.9 120 79.2
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 1.6e-46 189.5 120 80.0
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.6e-46 189.5 121 77.7
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 3.6e-46 188.3 120 77.5
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 3.6e-46 188.3 120 78.3
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 4.7e-46 188.0 100 84.0
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 1.1e-45 186.8 100 88.0
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 1.1e-45 186.8 100 88.0
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.4e-45 186.4 100 88.0
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 5.2e-45 184.5 100 83.0
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 6.8e-45 184.1 100 86.0
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 8.9e-45 183.7 100 86.0
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 8.9e-45 183.7 100 85.0
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 8.9e-45 183.7 100 85.0
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.5e-44 183.0 100 85.0
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.5e-44 183.0 143 68.5
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.5e-44 183.0 143 68.5
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 2.0e-44 182.6 100 85.0
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 2.0e-44 182.6 100 85.0
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.0e-44 182.6 100 85.0
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 3.4e-44 181.8 100 85.0
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.4e-44 181.8 130 74.6
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 4.4e-44 181.4 100 84.0
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 4.4e-44 181.4 100 87.0
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 7.6e-44 180.6 100 85.0
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 9.9e-44 180.3 100 84.0
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 1.3e-43 179.9 146 65.8
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 2.9e-43 178.7 100 83.0
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 2.9e-43 178.7 100 83.0
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 4.9e-43 177.9 100 82.0
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 4.9e-43 177.9 100 82.0
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.9e-42 176.0 100 84.0
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 4.2e-42 174.9 100 83.0
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 4.2e-42 174.9 100 83.0
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 4.2e-42 174.9 100 83.0
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 4.2e-42 174.9 100 83.0
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.6e-41 172.9 100 81.0
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 4.6e-41 171.4 100 78.0
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 5.1e-40 167.9 94 83.0
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 6.6e-40 167.5 86 93.0
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 4.3e-39 164.9 88 88.6
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 7.3e-39 164.1 86 89.5
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 2.8e-38 162.2 86 87.2
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 2.8e-38 162.2 143 61.5
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 3.6e-38 161.8 100 79.0
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 6.9e-37 157.5 100 76.0
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.2e-36 156.8 100 69.0
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 1.3e-35 153.3 100 67.0
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.9e-35 152.1 85 83.5
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 3.2e-34 148.7 118 60.2
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 2.3e-32 142.5 100 60.0
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 5.5e-26 121.3 139 49.6
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 2.1e-25 119.4 108 60.2
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 7.6e-20 100.9 103 49.5
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 2.5e-15 85.9 61 75.4
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 3.1e-13 79.0 41 85.4
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 6.9e-13 77.8 62 67.7
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.6e-12 75.9 41 85.4
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 1.1e-10 70.5 32 96.9
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 1.2e-09 67.0 107 38.3
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 1.1e-07 60.5 46 63.0
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 3.7e-06 55.5 33 81.8


User provided reference genes

Program Settings