Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.1e-294 1015.8 491 100.0
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.7e-282 975.3 491 96.3
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 1.1e-257 892.9 491 87.8
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 7.0e-252 873.6 491 86.4
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 2.7e-251 871.7 491 86.2
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 1.6e-248 862.4 528 80.9
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 3.7e-245 851.3 495 80.6
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.1e-244 849.7 495 80.4
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 9.2e-244 846.7 491 81.3
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 1.5e-241 839.3 492 81.1
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 8.9e-239 830.1 491 80.0
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 6.4e-237 823.9 492 79.3
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 8.3e-237 823.5 491 79.4
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 7.1e-236 820.5 491 79.4
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 7.1e-236 820.5 491 78.2
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 2.7e-235 818.5 491 78.6
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 3.5e-235 818.1 491 78.4
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 6.0e-235 817.4 492 79.7
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 6.0e-235 817.4 492 78.5
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 2.3e-234 815.5 491 77.4
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.9e-234 814.7 495 78.4
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 1.1e-233 813.1 491 78.4
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 2.5e-233 812.0 491 79.0
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 5.6e-233 810.8 492 78.9
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.6e-232 809.3 491 78.2
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.6e-232 809.3 491 77.0
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 6.2e-232 807.4 492 77.6
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 6.2e-232 807.4 491 78.2
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 8.1e-232 807.0 492 78.7
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 1.1e-231 806.6 491 78.0
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.1e-231 806.6 495 77.8
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.8e-231 805.8 491 77.4
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.4e-231 805.4 491 78.0
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.4e-231 805.4 506 77.1
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 5.2e-231 804.3 491 78.0
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 5.2e-231 804.3 491 78.0
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 6.8e-231 803.9 491 76.4
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 6.8e-231 803.9 491 77.0
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 8.9e-231 803.5 491 77.8
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 1.5e-230 802.7 491 76.4
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 1.5e-230 802.7 491 76.6
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 2.6e-230 802.0 491 77.8
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 3.4e-230 801.6 492 78.0
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 4.4e-230 801.2 491 77.4
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 4.4e-230 801.2 494 76.5
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 5.8e-230 800.8 491 77.8
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 5.8e-230 800.8 491 77.4
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 7.6e-230 800.4 492 77.8
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 7.6e-230 800.4 491 77.2
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 1.9e-228 795.8 411 93.4
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.2e-228 795.0 491 77.0
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 4.2e-228 794.7 479 77.5
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 4.2e-228 794.7 492 77.0
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 1.2e-227 793.1 491 76.2
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.6e-227 792.7 492 77.4
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 5.1e-226 787.7 492 76.4
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 1.5e-225 786.2 494 76.1
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 2.5e-225 785.4 491 76.2
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 5.6e-225 784.3 480 77.5
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 5.6e-225 784.3 491 76.0
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 7.3e-225 783.9 493 75.1
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 1.2e-224 783.1 572 67.7
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 1.6e-224 782.7 491 76.8
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 1.6e-224 782.7 516 73.8
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 2.8e-224 781.9 492 75.2
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 1.8e-223 779.2 491 74.5
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.5e-222 776.2 467 79.0
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 2.0e-222 775.8 493 75.3
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 9.9e-222 773.5 497 73.8
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 8.4e-221 770.4 491 75.2
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 5.4e-220 767.7 496 73.4
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 9.3e-220 766.9 492 74.6
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 9.3e-220 766.9 492 75.0
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 9.3e-220 766.9 494 73.7
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 1.2e-219 766.5 491 73.1
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 4.6e-219 764.6 491 72.7
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 4.6e-219 764.6 586 65.0
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 7.8e-219 763.8 491 72.9
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 1.0e-218 763.5 575 65.6
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.0e-218 763.5 492 75.0
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 1.3e-218 763.1 491 72.7
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 1.3e-218 763.1 491 72.7
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 1.7e-218 762.7 491 73.5
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 8.7e-218 760.4 491 73.9
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 1.1e-217 760.0 491 72.5
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.9e-217 759.2 494 73.5
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 5.6e-217 757.7 491 72.3
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 1.1e-215 753.4 494 73.3
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 1.8e-215 752.7 494 72.5
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 2.4e-215 752.3 491 72.7
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.0e-215 751.5 465 76.6
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 6.9e-215 750.7 491 71.9
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 2.6e-214 748.8 492 72.4
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 9.9e-214 746.9 491 71.3
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 6.4e-213 744.2 515 68.9
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 2.1e-211 739.2 495 70.9
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 5.6e-209 731.1 580 62.8
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.0e-206 722.6 548 65.1
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 4.5e-206 721.5 605 60.2
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.3e-205 719.9 500 69.4
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 3.8e-205 718.4 491 71.7
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 2.7e-203 712.2 411 80.8
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 4.3e-201 704.9 515 66.8
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 2.4e-199 699.1 491 68.0
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 2.8e-192 675.6 459 71.7
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 2.5e-185 652.5 411 74.2
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 1.1e-180 637.1 497 62.2
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 2.7e-179 632.5 440 68.9
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 1.1e-177 627.1 503 59.2
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 7.4e-177 624.4 374 78.3
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 2.4e-175 619.4 360 80.8
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 2.9e-173 612.5 496 59.9
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 9.4e-172 607.4 380 73.2
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 5.2e-170 601.7 380 72.6
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.6e-163 578.9 327 83.2
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 3.6e-163 578.9 349 77.9
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.0e-162 575.9 327 82.6
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 2.4e-159 566.2 327 80.4
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 1.2e-158 563.9 481 56.3
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 2.0e-150 536.6 328 77.1
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 1.0e-149 534.3 324 76.9
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 1.0e-149 534.3 333 75.7
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 5.5e-148 528.5 361 69.8
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.6e-139 500.4 352 70.2
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.7e-136 490.3 307 75.9
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 3.9e-133 479.2 327 70.6
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 7.6e-105 385.2 456 43.6
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.0e-101 374.8 222 77.9
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 5.1e-101 372.5 435 44.8
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 4.9e-96 355.9 442 44.8
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.1e-94 350.5 211 79.6
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 3.8e-88 329.7 239 64.4
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.8e-80 303.1 187 78.6
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.3e-76 289.7 159 83.6
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.3e-76 289.7 159 83.6
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.0e-73 280.8 159 82.4
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 3.6e-70 270.0 145 83.4
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 7.7e-57 225.7 446 33.4
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.0e-45 187.2 106 81.1
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.8e-43 179.9 106 78.3
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.3e-43 179.5 94 89.4
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.8e-42 177.9 93 89.2
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 2.5e-39 167.5 150 54.7
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 1.8e-37 161.4 119 66.4
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 4.5e-33 146.7 91 70.3
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 8.6e-24 115.9 90 61.1
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.5e-20 105.1 67 73.1
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 1.9e-18 98.2 69 69.6
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 9.2e-18 95.9 76 61.8
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.0e-16 92.4 70 67.1
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.0e-16 92.4 65 63.1
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 2.1e-09 68.2 122 38.5
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 4.6e-09 67.0 130 35.4


User provided reference genes

Program Settings