Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 4.0e-172 608.2 354 100.0
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 5.8e-147 524.6 349 90.0
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.7e-146 523.1 337 84.6
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 1.3e-117 427.2 338 77.2
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 9.9e-115 417.5 342 73.1
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 1.7e-114 416.8 342 73.1
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 4.8e-109 398.7 352 68.8
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 5.3e-68 262.3 336 52.7
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 1.5e-46 191.0 374 39.6
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 4.4e-46 189.5 360 40.8
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.3e-45 188.0 379 39.1
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 6.0e-43 179.1 353 40.2
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 3.0e-42 176.8 353 39.9
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 9.8e-38 161.8 392 34.2
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 2.2e-37 160.6 244 51.6
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 1.9e-36 157.5 343 35.9
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 6.6e-34 149.1 281 37.4
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 5.6e-33 146.0 361 36.0
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 2.1e-32 144.1 361 38.8
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 8.1e-32 142.1 278 39.9
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 3.1e-31 140.2 350 31.7
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 2.0e-30 137.5 262 36.6
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 2.6e-30 137.1 306 34.3
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 1.3e-29 134.8 358 34.4
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 2.2e-29 134.0 292 36.3
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 6.4e-29 132.5 306 41.8
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 1.2e-27 128.3 359 34.8
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 2.7e-27 127.1 267 34.8
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 7.8e-27 125.6 281 35.2
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 7.3e-25 119.0 288 33.3
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 7.3e-25 119.0 347 32.0
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 1.1e-23 115.2 304 34.5
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 1.8e-23 114.4 343 32.9
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 1.8e-23 114.4 276 35.5
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 2.4e-23 114.0 132 49.2
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 6.8e-23 112.5 323 32.5
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 6.8e-23 112.5 368 31.0
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 8.9e-23 112.1 257 35.8
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 8.9e-23 112.1 260 35.4
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 1.5e-22 111.3 297 34.7
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 2.0e-22 110.9 314 33.8
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 8.4e-21 105.5 322 40.4
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 1.9e-20 104.4 346 29.5
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 1.9e-20 104.4 308 28.9
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.4e-20 104.0 289 31.8
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 4.2e-20 103.2 306 28.8
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 4.2e-20 103.2 349 28.9
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 5.4e-20 102.8 306 32.0
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 7.1e-20 102.4 167 42.5
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 9.2e-20 102.1 328 30.2
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.2e-19 101.7 284 31.7
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 1.6e-19 101.3 342 34.8
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 2.3e-18 97.4 200 35.0
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 3.0e-18 97.1 288 44.1
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 6.6e-18 95.9 288 43.8
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 1.5e-17 94.7 346 28.9
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.9e-17 94.4 217 34.6
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 1.2e-16 91.7 387 29.5
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 3.6e-16 90.1 279 38.7
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 2.6e-14 84.0 132 41.7
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 9.9e-14 82.0 236 33.9
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 2.2e-13 80.9 233 37.3
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.1e-12 78.6 289 39.8
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 1.4e-12 78.2 256 27.7
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 2.4e-12 77.4 307 28.0
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 3.2e-12 77.0 244 33.6
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 2.7e-11 73.9 225 32.0
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.0e-10 72.0 273 33.3
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 2.3e-10 70.9 107 36.4
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 8.7e-10 68.9 359 25.6
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 1.5e-09 68.2 293 28.7
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 1.9e-09 67.8 59 59.3
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 5.6e-09 66.2 292 25.7
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 1.6e-08 64.7 150 38.0
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 2.1e-08 64.3 235 30.2
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 4.8e-08 63.2 163 32.5
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 1.1e-07 62.0 156 34.0
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 6.9e-07 59.3 59 54.2
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 1.2e-06 58.5 184 32.1
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.5e-06 58.2 32 65.6
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 1.5e-06 58.2 32 65.6
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 5.8e-06 56.2 62 46.8
Medtr4g094298 Medicago truncatula HOM05D007421 ORTHO05D009203 5.8e-06 56.2 54 53.7
MELO3C024933.2 Cucumis melo HOM05D007421 ORTHO05D009203 7.6e-06 55.8 74 48.6


User provided reference genes

Program Settings