Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.4e-173 612.8 318 100.0
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.4e-152 543.1 316 89.2
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 3.1e-152 542.0 316 89.2
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 7.0e-152 540.8 318 89.3
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 9.5e-149 530.4 318 87.7
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.4e-128 462.6 256 92.2
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 7.0e-128 461.1 256 91.8
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 2.9e-97 359.4 320 61.2
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 2.1e-95 353.2 317 60.6
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.7e-95 352.8 320 59.4
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.3e-94 350.5 324 59.0
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 9.6e-93 344.4 326 56.7
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.3e-92 344.0 319 58.0
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 4.8e-92 342.0 309 57.9
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 1.1e-91 340.9 316 56.6
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.8e-91 340.1 279 63.4
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 2.6e-90 336.3 321 57.9
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.6e-90 336.3 323 57.9
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 5.8e-90 335.1 323 57.0
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 5.8e-90 335.1 324 56.5
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.3e-89 334.0 320 56.6
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.7e-89 333.6 313 54.6
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 2.2e-89 333.2 300 59.0
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 4.9e-89 332.0 321 57.6
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 6.4e-89 331.6 316 55.4
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.4e-89 331.3 332 54.8
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 5.5e-88 328.6 323 54.8
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 7.1e-88 328.2 321 56.1
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.1e-87 326.6 319 52.7
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 2.1e-87 326.6 319 53.0
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 6.0e-87 325.1 320 55.0
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 7.9e-87 324.7 317 53.3
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 7.9e-87 324.7 323 53.9
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.0e-86 324.3 319 52.7
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.1e-85 320.9 323 53.9
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 1.9e-85 320.1 322 53.7
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 2.5e-85 319.7 324 54.0
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 7.4e-85 318.2 272 62.1
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 9.6e-85 317.8 323 54.5
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 1.3e-84 317.4 321 51.1
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.6e-84 317.0 320 54.7
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.6e-84 317.0 324 53.7
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.8e-84 316.2 320 54.1
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 2.8e-84 316.2 323 51.1
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 1.4e-83 313.9 349 50.7
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 1.8e-83 313.5 325 52.6
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.5e-82 310.5 296 54.4
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 5.8e-82 308.5 322 51.9
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.0e-81 307.8 320 51.6
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.7e-81 307.0 318 54.1
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.7e-81 307.0 164 98.8
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 2.2e-81 306.6 299 54.5
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 8.4e-81 304.7 342 51.8
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 8.4e-81 304.7 321 55.1
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 8.4e-81 304.7 319 54.5
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.5e-80 303.1 332 51.2
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 2.1e-79 300.1 325 51.1
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 7.9e-79 298.1 294 52.7
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.3e-78 297.4 321 49.5
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 2.3e-78 296.6 314 53.2
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 3.0e-78 296.2 321 50.8
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 3.9e-78 295.8 294 52.7
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 6.7e-78 295.0 297 54.2
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 8.7e-78 294.7 321 50.8
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 8.7e-78 294.7 327 50.2
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 9.7e-77 291.2 318 50.9
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.6e-76 290.4 301 54.2
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 2.2e-76 290.0 318 51.3
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.2e-76 290.0 320 51.9
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 2.8e-76 289.7 296 51.0
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 4.8e-76 288.9 421 43.7
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 6.3e-76 288.5 301 53.8
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.4e-75 287.3 318 51.3
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 1.8e-75 287.0 310 51.0
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 2.4e-75 286.6 317 50.2
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 3.1e-75 286.2 318 50.3
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 4.1e-75 285.8 324 49.4
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 4.1e-75 285.8 322 51.6
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 4.1e-75 285.8 325 50.8
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 6.9e-75 285.0 330 50.3
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 7.7e-74 281.6 323 47.4
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 7.7e-74 281.6 323 47.4
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 7.7e-74 281.6 323 47.4
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.0e-73 281.2 317 49.8
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.0e-73 281.2 323 50.2
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 2.9e-73 279.6 318 49.4
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 5.0e-73 278.9 322 47.8
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 8.5e-73 278.1 281 52.0
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-72 277.7 324 49.4
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.1e-72 277.7 319 47.6
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.9e-72 276.9 397 44.1
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 2.5e-72 276.6 323 47.7
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 2.5e-72 276.6 323 46.7
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 2.5e-72 276.6 323 46.7
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 2.5e-72 276.6 322 49.4
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 2.5e-72 276.6 317 50.5
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.5e-72 276.6 324 49.7
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 3.2e-72 276.2 318 48.4
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.2e-72 276.2 319 48.3
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.2e-72 276.2 319 48.9
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.2e-72 276.2 323 48.0
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 5.5e-72 275.4 321 47.0
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 7.2e-72 275.0 324 47.8
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 7.2e-72 275.0 324 49.7
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 7.2e-72 275.0 324 47.8
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.2e-71 274.2 280 49.6
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 2.1e-71 273.5 324 49.4
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 2.1e-71 273.5 323 47.4
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 2.7e-71 273.1 317 48.3
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.7e-71 273.1 323 47.4
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 6.1e-71 271.9 324 49.7
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.4e-70 270.8 313 47.3
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.3e-70 270.0 291 51.5
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 3.0e-70 269.6 325 47.7
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 3.0e-70 269.6 325 47.7
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 3.0e-70 269.6 325 47.7
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 8.8e-70 268.1 318 47.8
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 8.8e-70 268.1 325 46.8
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.5e-69 267.3 321 46.7
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.0e-69 266.9 259 57.1
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.5e-69 266.5 317 46.7
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 3.3e-69 266.2 323 48.3
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.7e-68 263.8 260 51.9
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 2.8e-68 263.1 321 46.1
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 2.4e-67 260.0 315 47.6
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 5.3e-67 258.8 314 46.8
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.7e-65 253.8 319 45.8
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 5.0e-65 252.3 319 46.4
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.1e-64 251.1 320 45.3
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 3.2e-64 249.6 324 45.7
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 4.2e-64 249.2 321 43.9
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 2.1e-63 246.9 323 43.7
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 3.6e-63 246.1 284 49.6
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 3.9e-62 242.7 325 43.1
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 7.2e-56 221.9 317 42.6
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 1.3e-52 211.1 329 41.9
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.3e-44 184.5 221 45.7
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 2.7e-42 176.8 251 38.2
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 6.8e-38 162.2 214 43.9
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 5.4e-35 152.5 298 33.6
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.6e-34 151.0 165 48.5
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 5.0e-33 146.0 314 30.9
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 4.7e-31 139.4 182 41.8
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 6.1e-31 139.0 170 46.5
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.0e-30 138.3 317 31.9
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 4.1e-27 126.3 320 30.9
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 5.2e-22 109.4 134 45.5
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.5e-21 107.8 134 44.8
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.1e-19 101.7 118 49.2
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.1e-15 87.4 104 45.2
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.2e-15 85.9 88 51.1
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.4e-14 84.7 90 53.3
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.4e-14 84.7 90 53.3
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 1.2e-13 81.6 141 39.7
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.2e-12 77.4 102 46.1
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 1.1e-11 75.1 75 45.3
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 1.9e-11 74.3 70 47.1
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 1.9e-11 74.3 70 47.1
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 2.1e-10 70.9 86 41.9
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 1.1e-06 58.5 83 36.1


User provided reference genes

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